Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_H17
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83218-6|CAI58632.1|  273|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z81496-11|CAB04069.2|  448|Caenorhabditis elegans Hypothetical p...    28   3.9  
AY204204-1|AAO39205.1|  448|Caenorhabditis elegans nuclear recep...    28   3.9  
Z83116-11|CAM84819.1|  278|Caenorhabditis elegans Hypothetical p...    27   9.1  

>Z83218-6|CAI58632.1|  273|Caenorhabditis elegans Hypothetical
           protein C31A11.10 protein.
          Length = 273

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 128 LQYNIFRFLNTLEYFKLFFFCDRATLVNCFFFFYNILIRVFD 253
           L  +I R + TL  F +F++  R  L+NCF +F+ I I   D
Sbjct: 99  LSISIERAVATL--FPIFYYNYRQNLLNCFVWFFIICIVSID 138


>Z81496-11|CAB04069.2|  448|Caenorhabditis elegans Hypothetical
           protein F09C6.9 protein.
          Length = 448

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
 Frame = +2

Query: 110 GSPRQN---LQYNIFRFLNTLEYFKLFFFCDRATLVNCFFFFYNILIRVFDLV*SYFDLK 280
           G P+ N    Q+  F    T+EY K F F  R    + F    +I +   +L  SY  + 
Sbjct: 250 GGPKHNPDRKQWMYFNLFTTVEYAKTFMFFHRLDSRDKFILTKHITLSCMNLHLSYISVA 309

Query: 281 KPTFI*RDNDYARFLS 328
           + + +  + D   F S
Sbjct: 310 RKSEVLTNPDGTSFPS 325


>AY204204-1|AAO39205.1|  448|Caenorhabditis elegans nuclear receptor
           NHR-116 protein.
          Length = 448

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
 Frame = +2

Query: 110 GSPRQN---LQYNIFRFLNTLEYFKLFFFCDRATLVNCFFFFYNILIRVFDLV*SYFDLK 280
           G P+ N    Q+  F    T+EY K F F  R    + F    +I +   +L  SY  + 
Sbjct: 250 GGPKHNPDRKQWMYFNLFTTVEYAKTFMFFHRLDSRDKFILTKHITLSCMNLHLSYISVA 309

Query: 281 KPTFI*RDNDYARFLS 328
           + + +  + D   F S
Sbjct: 310 RKSEVLTNPDGTSFPS 325


>Z83116-11|CAM84819.1|  278|Caenorhabditis elegans Hypothetical
           protein M01B2.12 protein.
          Length = 278

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 66  LIEIKKKCLRLVKEEHK 16
           L+E+ KKCL  VKE++K
Sbjct: 66  LLELYKKCLNFVKEDNK 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,181,291
Number of Sequences: 27780
Number of extensions: 142376
Number of successful extensions: 294
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)