BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P01_pT_H16 (680 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 83 1e-16 Z83102-9|CAI79156.1| 82|Caenorhabditis elegans Hypothetical pr... 31 0.76 AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ... 29 4.1 >U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein, large subunitprotein 6 protein. Length = 217 Score = 83.4 bits (197), Expect = 1e-16 Identities = 42/75 (56%), Positives = 52/75 (69%), Gaps = 1/75 (1%) Frame = -3 Query: 288 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTS 112 +R L GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLRRI Q +VI TS Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126 Query: 111 TRISLGNXKLPKHXN 67 ++++ K+P+H N Sbjct: 127 LKVNVSGVKIPEHIN 141 Score = 29.9 bits (64), Expect = 1.8 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = -3 Query: 552 RNYDLGNGVMRFSKSKMFHKKAKYK 478 RN+DL GV+RFS S++ KK + K Sbjct: 12 RNFDLSPGVLRFSASRLRLKKGEKK 36 >Z83102-9|CAI79156.1| 82|Caenorhabditis elegans Hypothetical protein C54C8.12 protein. Length = 82 Score = 31.1 bits (67), Expect = 0.76 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = -3 Query: 357 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 223 FYPT+ +A S G P + PN ++ V A RHAG R Sbjct: 26 FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70 >AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical protein K09F6.3 protein. Length = 1360 Score = 28.7 bits (61), Expect = 4.1 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Frame = -2 Query: 214 CWNSAQRSA-FSYWTFCFQFVPATPYSSALCD----RHLHQNFTRQLQTAKTL 71 C N RSA F W C+ FVP + +CD ++Q R L T T+ Sbjct: 1167 CSNGIGRSAAFVSWELCYHFVPV---NFEICDFSVAEFVYQKMIRSLDTTSTV 1216 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,610,823 Number of Sequences: 27780 Number of extensions: 294616 Number of successful extensions: 621 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 584 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 620 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1550199966 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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