Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_H12
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    26   3.4  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    26   4.5  
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    26   4.5  

>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 287  PQHLSRMIGCLYPEQKLILERQ 222
            P+HLSR +  L  E K +LER+
Sbjct: 1540 PRHLSRFVKVLPREYKAVLERE 1561


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 413 VITENAVNLVKTKYAPTSTYHKSCEFF 493
           +I E+    V   YA   +YHK C FF
Sbjct: 180 MIDESIAEQVGVVYANFPSYHKMCRFF 206


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 89  QKHNILM*KIIKIGTHYKSINPYSINVHTQGSILY 193
           ++H     KI +IG  YK +NP  +   T G ++Y
Sbjct: 115 EQHAEFFKKIFEIGRRYKVLNPNRLG-STYGKLMY 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,557
Number of Sequences: 5004
Number of extensions: 44749
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)