Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_H12
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1258 - 27376626-27376850,27376936-27377069,27377424-273776...    29   2.7  

>12_02_1258 -
           27376626-27376850,27376936-27377069,27377424-27377678,
           27377804-27378136,27378322-27378413,27378519-27378629,
           27378815-27378886,27379000-27379071,27379141-27379212,
           27379322-27379393,27379505-27379576,27379786-27379921,
           27380044-27380092
          Length = 564

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = +2

Query: 179 GSILYVHF*--STSFYTGVLISVFVLGTNNQSYVIGAVEL 292
           GS+ ++ F   ST+F++G + +V VLGT   S  +G +EL
Sbjct: 150 GSLTHLRFLNLSTNFFSGEIPNVGVLGTFKSSSFVGNLEL 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,510,927
Number of Sequences: 37544
Number of extensions: 219465
Number of successful extensions: 399
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)