Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_H12
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50309-5|AAG24135.1|  339|Caenorhabditis elegans Seven tm recept...    30   1.0  
Z81075-4|CAB03047.2|  596|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AJ005701-1|CAA06686.1|  596|Caenorhabditis elegans Na/Ca,K-excha...    27   7.2  
Z81065-1|CAB02968.1|  399|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-lik...    27   9.5  

>U50309-5|AAG24135.1|  339|Caenorhabditis elegans Seven tm receptor
           protein 90 protein.
          Length = 339

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 26/69 (37%), Positives = 35/69 (50%)
 Frame = -3

Query: 548 NFL*TFLSIDFFHNLSLIKRIHMIYGRYS*EHTLFSLDLPHSLL*LFSELNTNHCYFNVI 369
           +FL  F SI  F N  ++   H+  G Y    +L SL LPH L   F+ LN + CY   I
Sbjct: 47  SFLGIFFSIVDFLNKPMV---HIFGGAYL-VFSLNSLGLPHFLANWFNALNCS-CYGMTI 101

Query: 368 MLLIDNHIF 342
            LL  + I+
Sbjct: 102 SLLAVHFIY 110


>Z81075-4|CAB03047.2|  596|Caenorhabditis elegans Hypothetical
           protein F35C12.2a protein.
          Length = 596

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -2

Query: 195 TYNILPCV---CTLIE*GLIDL*CVPILIIFYIKMLCFCFLVTFFV 67
           T+NIL CV   CTL    ++DL   P+     I ML    LV FF+
Sbjct: 180 TFNIL-CVLAFCTLFSKSILDLTWWPLFRDVSIYMLALAMLVFFFM 224


>AJ005701-1|CAA06686.1|  596|Caenorhabditis elegans
           Na/Ca,K-exchanger protein.
          Length = 596

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -2

Query: 195 TYNILPCV---CTLIE*GLIDL*CVPILIIFYIKMLCFCFLVTFFV 67
           T+NIL CV   CTL    ++DL   P+     I ML    LV FF+
Sbjct: 180 TFNIL-CVLAFCTLFSKSILDLTWWPLFRDVSIYMLALAMLVFFFM 224


>Z81065-1|CAB02968.1|  399|Caenorhabditis elegans Hypothetical
           protein F16C3.1 protein.
          Length = 399

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +3

Query: 150 ILILLMYIHRGV-YYMYIFKAPR 215
           + +L+ Y+H  V +YMYIF +P+
Sbjct: 340 VTLLIYYLHHAVLFYMYIFWSPQ 362


>Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical
           protein F01G4.1 protein.
          Length = 1474

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 35  ITNKIFELXKITKNVTRKQKHNILM*KIIKIGTHYK 142
           +T K+ +  K+ +   R+QKH  LM  II+ G  +K
Sbjct: 264 VTEKLEKQQKMEQERKRRQKHTDLMQAIIQHGKEFK 299


>Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical
           protein F01G4.1 protein.
          Length = 1474

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 35  ITNKIFELXKITKNVTRKQKHNILM*KIIKIGTHYK 142
           +T K+ +  K+ +   R+QKH  LM  II+ G  +K
Sbjct: 264 VTEKLEKQQKMEQERKRRQKHTDLMQAIIQHGKEFK 299


>AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-like
           protein protein.
          Length = 1474

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 35  ITNKIFELXKITKNVTRKQKHNILM*KIIKIGTHYK 142
           +T K+ +  K+ +   R+QKH  LM  II+ G  +K
Sbjct: 264 VTEKLEKQQKMEQERKRRQKHTDLMQAIIQHGKEFK 299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,250,085
Number of Sequences: 27780
Number of extensions: 247910
Number of successful extensions: 474
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)