Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_H09
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase comp...   182   5e-47
SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subu...    53   5e-08
SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s...    27   2.1  
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    27   2.7  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   3.6  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    27   3.6  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   4.8  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   4.8  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   8.3  

>SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase complex
           II subunit Rpb7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 172

 Score =  182 bits (443), Expect = 5e-47
 Identities = 89/170 (52%), Positives = 116/170 (68%), Gaps = 2/170 (1%)
 Frame = -2

Query: 573 FYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQID--NIGAGLI 400
           F+   L   I LHP YFGP++ + +K KL  DVEGTC+G+YG++I V   +  +I  G +
Sbjct: 3   FFLKELSLTISLHPSYFGPRMQDYLKAKLLADVEGTCSGQYGYIICVLDSNTIDIDKGRV 62

Query: 399 QHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEF 220
             GQGF  + VKY+AV++RPF+GEV+D IVT VNK+G FA IGPL  F+S H +P  M+F
Sbjct: 63  VPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKF 122

Query: 219 CPNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYLG 70
            P  NPP Y    ED VI++   +RLKIVGTR DA+ IFAI T+  DYLG
Sbjct: 123 DPTANPPNYSG--EDQVIEKGSNVRLKIVGTRTDATEIFAIATMKEDYLG 170


>SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subunit
           Rpc25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 52.8 bits (121), Expect = 5e-08
 Identities = 33/116 (28%), Positives = 52/116 (44%)
 Frame = -2

Query: 546 ILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQHGQGFVMYPV 367
           I +HP  F     E + ++++           G  I V     IG G+I++G G     V
Sbjct: 11  ISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIKYGDGSSYMNV 70

Query: 366 KYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFCPNVNPP 199
            ++ ++FRPF+GEV+ G +   ++ G+   I     F     IP  M F P V  P
Sbjct: 71  VFRLIIFRPFRGEVMLGKIKSCSEEGIRVTIS----FFDDIFIPKDMLFDPCVFRP 122


>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
           subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
 Frame = -2

Query: 450 GFVIAVTQIDNIG-AGLIQHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQV--NKVGMFA 280
           G V+A   I  +  +  + +   F    V+   +VF P KG+ L+G +  V  + +G+  
Sbjct: 46  GIVLAYDNIRFLEKSAKVMYDSPFSFIWVRVDVLVFSPKKGDCLEGKINLVSPSHIGLLI 105

Query: 279 QIGPLKCFISHHSIP-DYMEFCPNVNPPCYKSKQED-SVIQEEDVIRLKIVGTRVDASGI 106
            +G     I   SIP D++   P+      + K  D ++++    +   + G + +A   
Sbjct: 106 -LGIFNASIPRKSIPKDWIFIEPDTTEEQGRWKTNDGNILEPGKDLEFVVDGIQREAGLT 164

Query: 105 FAIGTL 88
              GTL
Sbjct: 165 MVQGTL 170


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 573 FYHISLEHEILLHPKYF-GPQLLETVKQKLYT 481
           FYH  +E+ + +  +YF GP+LL   ++  Y+
Sbjct: 185 FYHAGMEYNVRVASRYFKGPELLVDFREYDYS 216


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
 Frame = +2

Query: 311 TIPSKTSPLNGLNTTALY--LTGYMTNPCPCCMRPAPI--LSI*VTAITNPYLPVQVPST 478
           T P  TSP N  NT   +  L     +P    + P P   L   V++ ++PY      ST
Sbjct: 136 TDPFLTSPGNKQNTVDSFRPLPETPVSPGGSLVHPLPRPPLPSSVSSHSSPYSTTS--ST 193

Query: 479 SVYSFCLTVSNSCGPK 526
           S+YS    +S SC P+
Sbjct: 194 SLYSLYNDISLSCSPE 209


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +2

Query: 464 QVPSTSVYSFCLTVSNSCGPKYFGCNKISCSNEMW*NIFQRW 589
           Q+ +   +S      +S  P YF   + +   E+W N+F+ W
Sbjct: 856 QIETFKAWSMKFKEKSSGNPSYFFSPEDTEEKELWNNLFEDW 897


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -3

Query: 623 NLIEWNTNRNLSTAEKCSTTFHWSTKFCYIR 531
           NL+E N+N N   A   S    W    CY R
Sbjct: 725 NLLEHNSNNNAKLALNESLLCSWENLLCYRR 755


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 419 LSI*VTAITNPYLPVQVPSTSVYSFCLTVSNSCG-PKYFGCNKI 547
           L+I  TAI + +LP+++  T+  S+     +SC  P  F  NK+
Sbjct: 472 LTIPHTAINDSWLPMKLKETNAISYYRKTCSSCKYPFQFFINKL 515


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 604  LIVICPPLKNVLPHFIGARNFVTSEIFRS 518
            LI+   PL+N LP      NFV  +IF S
Sbjct: 1022 LILTGTPLQNNLPELWALLNFVLPKIFNS 1050


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,027
Number of Sequences: 5004
Number of extensions: 66471
Number of successful extensions: 192
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)