Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_H09
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0244 - 19344418-19344483,19344961-19345029,19345355-193454... 202 2e-52
05_01_0416 + 3283403-3283930 81 9e-16
05_03_0030 + 7529814-7530257,7530409-7530462,7531605-7532793,753... 64 1e-10
07_03_0362 - 17217515-17217604,17217690-17217779,17217866-172179... 55 5e-08
12_02_0699 + 22245933-22246213,22246493-22246575,22246844-222471... 30 1.6
09_04_0109 - 14674980-14675004,14675861-14676468 29 5.0
04_03_0664 + 18501248-18502802,18503370-18505054 28 6.6
01_06_0249 + 27868897-27871599 28 6.6
01_01_0471 - 3467275-3467351,3467526-3467895,3468258-3468555,346... 28 6.6
>05_04_0244 -
19344418-19344483,19344961-19345029,19345355-19345420,
19345735-19345785,19345892-19346057,19346148-19346263
Length = 177
Score = 202 bits (494), Expect = 2e-52
Identities = 89/171 (52%), Positives = 128/171 (74%)
Frame = -2
Query: 576 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 397
MF+HI LE + LHP++FGP L + + KL DVEGTC+G++GFV+A+T ++++G GLI+
Sbjct: 1 MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDVGKGLIR 60
Query: 396 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFC 217
G G+V +PVKY+ VVFRPFKGE+L+ +VT VNK+G FA+ GP++ F+S+H IPD MEF
Sbjct: 61 EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEF- 119
Query: 216 PNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYLGXV 64
+ + P Y + IQ++ +RLKI+GTRVDA+ IF IGT+ D+LG +
Sbjct: 120 QSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 170
>05_01_0416 + 3283403-3283930
Length = 175
Score = 81.0 bits (191), Expect = 9e-16
Identities = 53/176 (30%), Positives = 95/176 (53%), Gaps = 7/176 (3%)
Frame = -2
Query: 576 MFYHISLEHEILLHPKYFGPQ---LLETVKQKLYTDVEGTCTGK-YGFVIAVTQIDNIGA 409
+F + + +L+ P PQ L + V +L D+ K +G+ IAV+++ I
Sbjct: 2 VFLKVEMSLNVLISPSQLSPQGLLLRKAVIVRLLEDIANRKASKDHGYYIAVSELKAISE 61
Query: 408 GLIQHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLK-CFISHHSIPD 232
G ++ G V++PV + + +P KGEVL G V ++ K G+F + GP++ F+S ++ D
Sbjct: 62 GKVRELTGDVLFPVTFTCITQKPMKGEVLVGSVDKILKHGIFLKSGPIESIFLSEKTMSD 121
Query: 231 YMEFCPNVNPPCYKSKQEDSVIQEEDVIRLKIVGTR-VDASGIF-AIGTLIGDYLG 70
+ ++ N E S ++++ V+R K++G R ++A F + TL GDYLG
Sbjct: 122 F-KYIGGENA---VFMNEHSKLEKDTVVRFKVMGFRWMEADRQFQLLATLAGDYLG 173
>05_03_0030 +
7529814-7530257,7530409-7530462,7531605-7532793,
7532861-7533522
Length = 782
Score = 63.7 bits (148), Expect = 1e-10
Identities = 39/151 (25%), Positives = 78/151 (51%), Gaps = 5/151 (3%)
Frame = -2
Query: 576 MFYHISLEHEILLHPKYFGPQ---LLETVKQKLYTDVEGTCTGK-YGFVIAVTQIDNIGA 409
+F + + +L+ P P+ L + V L ++ K +G+ IAV+++ I
Sbjct: 2 VFLKVDMSWNVLISPSELSPKGLLLRKAVIVSLLEEIANRKASKDHGYYIAVSELKAISE 61
Query: 408 GLIQHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLK-CFISHHSIPD 232
G ++ G V++PV + + +P KGE+L G V ++ K G+F + GP++ F+S ++ D
Sbjct: 62 GKVRELTGDVLFPVTFTCITQKPTKGEILVGSVDKILKHGVFLKSGPIESIFLSEKTLSD 121
Query: 231 YMEFCPNVNPPCYKSKQEDSVIQEEDVIRLK 139
Y ++ NP + S ++++ +R K
Sbjct: 122 Y-KYIGGENP---MFMNDHSKLEKDTAVRFK 148
>07_03_0362 -
17217515-17217604,17217690-17217779,17217866-17217935,
17218362-17218425,17219117-17219204,17219631-17219726,
17219858-17219968
Length = 202
Score = 55.2 bits (127), Expect = 5e-08
Identities = 32/117 (27%), Positives = 56/117 (47%)
Frame = -2
Query: 576 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 397
MF +EH + + P L++ +K +L G ++V I ++ G I
Sbjct: 1 MFVLSQIEHNLPMPPHLLSRPLVDAIKAELERLFLDKVVANLGLCVSVYDIRSVEGGFIF 60
Query: 396 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYM 226
G+G Y V ++ ++FRPF GEVL G ++ ++ G+ + F S SIP ++
Sbjct: 61 PGEGCSTYKVSFRLLMFRPFVGEVLVGKISGYDEKGLHVSLD----FFSDISIPGHL 113
>12_02_0699 +
22245933-22246213,22246493-22246575,22246844-22247125,
22248725-22248986,22250146-22251781,22251910-22252416
Length = 1016
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 340 WSKHNSFVFNRVHDKPLSMLYETSSDIVYLSYRY 441
W +HN+ VFN + + +L +SDI S+RY
Sbjct: 183 WKRHNNKVFNSLDEPAKLVLRRCASDIDIWSHRY 216
>09_04_0109 - 14674980-14675004,14675861-14676468
Length = 210
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 341 GLNTTALYLTGYMTNPCPCCMRPAPILSI*VTAITNPYLPVQVPST 478
G T + T + N +RP+P++S A T+P LP+ VP+T
Sbjct: 117 GARTIGEWGTTPLPNAIDKPLRPSPLISGRRQASTSPTLPLTVPAT 162
>04_03_0664 + 18501248-18502802,18503370-18505054
Length = 1079
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Frame = +2
Query: 344 LNTTALYLTGYMTNPCPCCMRPAPILSI*VTAITN----PYLPV--QVPSTS-VYSFCLT 502
+N T L + GY + PC + I+++ I+N +LP ++PS +Y CL
Sbjct: 597 MNLTKLKIKGYNGSRSPCWLGNTTIINLTYLYISNCSYWQHLPPLGELPSLKYLYLICLN 656
Query: 503 VSNSCGPKYFGCNK 544
++GC +
Sbjct: 657 SVKRIDSSFYGCER 670
>01_06_0249 + 27868897-27871599
Length = 900
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 472 RHLYWQIWICDSGNSNRQYRSWSHTTWTRVCHVPC 368
R LY ++ D + R Y WSH T + HV C
Sbjct: 247 RRLYKLEYMVDDPLAPRGYNMWSHATRMYINHVHC 281
>01_01_0471 -
3467275-3467351,3467526-3467895,3468258-3468555,
3468680-3469734,3469823-3470467
Length = 814
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 554 STKFCYIRNISVHNYWRQSNRSYTLMWKA 468
S + + R VHN W Q ++S+ MW+A
Sbjct: 562 SAELHWCRRGRVHNDWAQKHKSFVDMWEA 590
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,522,169
Number of Sequences: 37544
Number of extensions: 386000
Number of successful extensions: 928
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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