Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_H09
(727 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024812-4|AAF59550.1| 197|Caenorhabditis elegans Hypothetical ... 267 6e-72
Z70783-7|CAA94858.1| 239|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 34 0.12
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 34 0.12
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 34 0.12
U67953-6|ABA00176.1| 287|Caenorhabditis elegans Hypothetical pr... 33 0.21
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 32 0.36
AJ131742-1|CAA10498.1| 590|Caenorhabditis elegans protein ( Cae... 31 0.84
AF098989-4|AAK18956.2| 590|Caenorhabditis elegans Dystrobrevin ... 31 0.84
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 31 1.1
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 31 1.1
AF016687-5|AAC48093.1| 709|Caenorhabditis elegans Hypothetical ... 29 4.5
Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical pr... 28 5.9
U10438-16|AAO61447.1| 977|Caenorhabditis elegans Glutamate rece... 28 5.9
U10438-15|AAA19090.3| 908|Caenorhabditis elegans Glutamate rece... 28 5.9
AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein... 28 5.9
AF318606-1|AAK01094.2| 977|Caenorhabditis elegans non-NMDA iono... 28 5.9
Z81050-5|CAB02855.2| 367|Caenorhabditis elegans Hypothetical pr... 28 7.8
>AC024812-4|AAF59550.1| 197|Caenorhabditis elegans Hypothetical
protein Y54E10BR.6 protein.
Length = 197
Score = 267 bits (654), Expect = 6e-72
Identities = 117/170 (68%), Positives = 143/170 (84%)
Frame = -2
Query: 579 KMFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLI 400
+MF+H+SL+HE+ LHPKYFGP L ET+K KL+ +VEGTCTGKYGFVIAVT ID IG GLI
Sbjct: 23 RMFFHLSLDHEVCLHPKYFGPNLNETIKMKLFNEVEGTCTGKYGFVIAVTTIDTIGHGLI 82
Query: 399 QHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEF 220
Q G+GFV+YPV+YKA+VFRPFKG+V+DG+VTQVNKVG+F IGPL CFIS H IP MEF
Sbjct: 83 QPGRGFVIYPVRYKAIVFRPFKGQVVDGVVTQVNKVGIFCDIGPLSCFISRHCIPPDMEF 142
Query: 219 CPNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYLG 70
PN PCYK+ E +VI+ +D IR+K++GTRVDA+ IFAIGTL+ D+LG
Sbjct: 143 DPNSEKPCYKTNDEANVIRNDDEIRVKLIGTRVDANDIFAIGTLMDDFLG 192
>Z70783-7|CAA94858.1| 239|Caenorhabditis elegans Hypothetical
protein ZK856.10 protein.
Length = 239
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Frame = -2
Query: 564 ISLEHE-ILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQHGQ 388
+SL H+ + + P +K++L + G I V I+ IG I G+
Sbjct: 4 LSLLHDTVAIQPHQLSSDQQIVIKKRLNERLANKIIPDLGLCICVYDINEIGDSYILPGE 63
Query: 387 GFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGM 286
G VK++ +VFRPF EV++ V ++ G+
Sbjct: 64 GDCRARVKFRMIVFRPFVDEVIEAKVIGSSRQGL 97
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 373 VHDKPLSMLYETSSDIVYLSYRYHKSIFASTGAFH 477
V KP ++ TSSD V++ Y+Y + +F FH
Sbjct: 797 VFQKPSKLMRSTSSDSVFIDYQYREKMFLDVSWFH 831
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 373 VHDKPLSMLYETSSDIVYLSYRYHKSIFASTGAFH 477
V KP ++ TSSD V++ Y+Y + +F FH
Sbjct: 797 VFQKPSKLMRSTSSDSVFIDYQYREKMFLDVSWFH 831
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 373 VHDKPLSMLYETSSDIVYLSYRYHKSIFASTGAFH 477
V KP ++ TSSD V++ Y+Y + +F FH
Sbjct: 797 VFQKPSKLMRSTSSDSVFIDYQYREKMFLDVSWFH 831
>U67953-6|ABA00176.1| 287|Caenorhabditis elegans Hypothetical
protein ZC13.10 protein.
Length = 287
Score = 33.1 bits (72), Expect = 0.21
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 157 LFLYYAILLFTLITWRIYIR--AELHIVWY*MMGYKTFERSYLRKHANLIYL 306
LFL AI+LFTL W+ R +H++W + + TF+ + + A IY+
Sbjct: 150 LFLSIAIILFTLSMWKSRRRNWYFIHVIWQETIQFCTFQWTIIEFFAFFIYI 201
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 32.3 bits (70), Expect = 0.36
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +2
Query: 302 TCVTIPSK--TSP---LNGLNTTALYLTGYMTNPCPCCMRPAPILSI*VTAITNPYLPVQ 466
T VT+PS T P + T A T +T P P+ ++++ T +TNP V
Sbjct: 341 TVVTVPSTVVTKPNTVVTSSPTVATTPTTVVTTPSTVVTVPSTVVTVPTTVVTNPSTVVT 400
Query: 467 VPSTSV 484
PST V
Sbjct: 401 APSTVV 406
Score = 31.9 bits (69), Expect = 0.48
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +2
Query: 302 TCVTIPSK--TSPLNGLNTTALYLTGYMTNPCPCCMRPAPILSI*VTAITNPYLPVQVPS 475
T VTIPS TSP+ +T + +T P +P+ +++ T +T P V P+
Sbjct: 295 TVVTIPSTVVTSPITTPSTVVTVPSTVVTVPSTAVTKPSTVVTAPSTVVTVPSTVVTKPN 354
Query: 476 TSVYS 490
T V S
Sbjct: 355 TVVTS 359
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +2
Query: 302 TCVTIPSK--TSPLNGLNTTALYLTGYMTNPCPCCMRPAPILSI*VTAITNPYLPVQVPS 475
T VT P+ T P + + +T +T P P+ ++++ TA+T P V PS
Sbjct: 281 TTVTGPTTVVTVPTTVVTIPSTVVTSPITTPSTVVTVPSTVVTVPSTAVTKPSTVVTAPS 340
Query: 476 TSV 484
T V
Sbjct: 341 TVV 343
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +2
Query: 272 PICANMPTLFTCVTIPSKTSPLNGLNTTALYLTGYMTNPCPCCMRPAPILSI*VTAITNP 451
P A PT T VT PS + +T T +TNP P+ ++++ T +T+
Sbjct: 361 PTVATTPT--TVVTTPSTVVTVP--STVVTVPTTVVTNPSTVVTAPSTVVTVPTTVMTSR 416
Query: 452 YLPVQVPST 478
+ P+T
Sbjct: 417 STVITTPTT 425
>AJ131742-1|CAA10498.1| 590|Caenorhabditis elegans protein (
Caenorhabditis elegansmRNA for dystrobrevin. ).
Length = 590
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +2
Query: 359 LYLTGYMTNPCPCCMRPAPILSI*VTAITNPYLPVQVPSTSVYSF 493
++L ++++PCP C+ P+L + +++N Y PV + V SF
Sbjct: 229 VFLDTFLSDPCPPCIMWLPLLHR-MASVSNVYHPVVCDACQVRSF 272
>AF098989-4|AAK18956.2| 590|Caenorhabditis elegans Dystrobrevin
homolog protein 1 protein.
Length = 590
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +2
Query: 359 LYLTGYMTNPCPCCMRPAPILSI*VTAITNPYLPVQVPSTSVYSF 493
++L ++++PCP C+ P+L + +++N Y PV + V SF
Sbjct: 229 VFLDTFLSDPCPPCIMWLPLLHR-MASVSNVYHPVVCDACQVRSF 272
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical
protein ZC101.2f protein.
Length = 2389
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 494 CLTVSNSCGPKYFGCNKISCSNEMW 568
C +S +C P F CN C +MW
Sbjct: 183 CPAISRTCEPNEFKCNNNKCVQKMW 207
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical
protein ZC101.2e protein.
Length = 3375
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 494 CLTVSNSCGPKYFGCNKISCSNEMW 568
C +S +C P F CN C +MW
Sbjct: 183 CPAISRTCEPNEFKCNNNKCVQKMW 207
>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical
protein ZC101.2c protein.
Length = 2295
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 494 CLTVSNSCGPKYFGCNKISCSNEMW 568
C +S +C P F CN C +MW
Sbjct: 183 CPAISRTCEPNEFKCNNNKCVQKMW 207
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical
protein ZC101.2a protein.
Length = 2482
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 494 CLTVSNSCGPKYFGCNKISCSNEMW 568
C +S +C P F CN C +MW
Sbjct: 183 CPAISRTCEPNEFKCNNNKCVQKMW 207
>Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical
protein ZC101.2b protein.
Length = 1160
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 494 CLTVSNSCGPKYFGCNKISCSNEMW 568
C +S +C P F CN C +MW
Sbjct: 183 CPAISRTCEPNEFKCNNNKCVQKMW 207
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical
protein ZC101.2f protein.
Length = 2389
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 494 CLTVSNSCGPKYFGCNKISCSNEMW 568
C +S +C P F CN C +MW
Sbjct: 183 CPAISRTCEPNEFKCNNNKCVQKMW 207
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical
protein ZC101.2e protein.
Length = 3375
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 494 CLTVSNSCGPKYFGCNKISCSNEMW 568
C +S +C P F CN C +MW
Sbjct: 183 CPAISRTCEPNEFKCNNNKCVQKMW 207
>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical
protein ZC101.2c protein.
Length = 2295
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 494 CLTVSNSCGPKYFGCNKISCSNEMW 568
C +S +C P F CN C +MW
Sbjct: 183 CPAISRTCEPNEFKCNNNKCVQKMW 207
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical
protein ZC101.2a protein.
Length = 2482
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 494 CLTVSNSCGPKYFGCNKISCSNEMW 568
C +S +C P F CN C +MW
Sbjct: 183 CPAISRTCEPNEFKCNNNKCVQKMW 207
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 494 CLTVSNSCGPKYFGCNKISCSNEMW 568
C +S +C P F CN C +MW
Sbjct: 183 CPAISRTCEPNEFKCNNNKCVQKMW 207
>AF016687-5|AAC48093.1| 709|Caenorhabditis elegans Hypothetical
protein T21D12.11 protein.
Length = 709
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 626 TNLIEWNTNRNLSTAEKCSTTFHWSTKFCYIRNISVHNYWR 504
T +IE++T+ L T K STT +T + + +WR
Sbjct: 666 TRVIEFDTSTELQTTSKTSTTTEDTTTVGTTTEMEMRRFWR 706
>Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical
protein C44H4.3 protein.
Length = 680
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 593 LSTAEKCSTTFHWSTKFCYIRNISVHNYWRQSNR 492
+ST EK +TT +T+ + +++ +WR SN+
Sbjct: 535 VSTTEKSTTTTTTTTEASKSKKVNMERFWRLSNK 568
>U10438-16|AAO61447.1| 977|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 2, isoform b protein.
Length = 977
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -2
Query: 522 GPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 397
G ++ E +K+ + TD +GT TG+ F + N A +++
Sbjct: 393 GKKIAEAIKKVVLTDKDGTLTGRIQFDKVTGKRTNFSAEIVE 434
>U10438-15|AAA19090.3| 908|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 2, isoform a protein.
Length = 908
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -2
Query: 522 GPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 397
G ++ E +K+ + TD +GT TG+ F + N A +++
Sbjct: 324 GKKIAEAIKKVVLTDKDGTLTGRIQFDKVTGKRTNFSAEIVE 365
>AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein
protein.
Length = 680
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 593 LSTAEKCSTTFHWSTKFCYIRNISVHNYWRQSNR 492
+ST EK +TT +T+ + +++ +WR SN+
Sbjct: 535 VSTTEKSTTTTTTTTEASKSKKVNMERFWRLSNK 568
>AF318606-1|AAK01094.2| 977|Caenorhabditis elegans non-NMDA
ionotropic glutamate receptorsubunit GLR-2 protein.
Length = 977
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -2
Query: 522 GPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 397
G ++ E +K+ + TD +GT TG+ F + N A +++
Sbjct: 393 GKKIAEAIKKVVLTDKDGTLTGRIQFDKVTGKRTNFSAEIVE 434
>Z81050-5|CAB02855.2| 367|Caenorhabditis elegans Hypothetical
protein C50B6.6 protein.
Length = 367
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 48 FQVIVVLIPNSLQLKSRLQKCHSRQLSYQQSLIGSHP 158
F VIV++IP + + L +CH +Q Y+Q L +P
Sbjct: 150 FWVIVIIIP--VFCFATLPRCHPKQDHYKQDLYDKNP 184
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,685,741
Number of Sequences: 27780
Number of extensions: 368466
Number of successful extensions: 1035
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -