Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_H09
(727 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59180.1 68418.m07417 DNA-directed RNA polymerase II identica... 202 2e-52
At4g14660.1 68417.m02254 RNA polymerase Rpb7 N-terminal domain-c... 90 1e-18
At3g22900.1 68416.m02886 RNA polymerase Rpb7 N-terminal domain-c... 79 3e-15
At1g06790.2 68414.m00722 RNA polymerase Rpb7 N-terminal domain-c... 50 1e-06
At1g06790.1 68414.m00723 RNA polymerase Rpb7 N-terminal domain-c... 50 1e-06
At4g14520.2 68417.m02238 DNA-directed RNA polymerase II-related ... 41 7e-04
At4g14520.1 68417.m02237 DNA-directed RNA polymerase II-related ... 41 7e-04
At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial... 29 3.1
At1g74600.1 68414.m08641 pentatricopeptide (PPR) repeat-containi... 29 4.1
At2g44800.1 68415.m05575 oxidoreductase, 2OG-Fe(II) oxygenase fa... 28 5.5
At5g28770.2 68418.m03535 bZIP transcription factor family protei... 28 7.2
At5g28770.1 68418.m03534 bZIP transcription factor family protei... 28 7.2
At1g65200.1 68414.m07392 ubiquitin carboxyl-terminal hydrolase-r... 27 9.6
>At5g59180.1 68418.m07417 DNA-directed RNA polymerase II identical
to Swiss-Prot:P38421 DNA-directed RNA polymerase II 19
kDa polypeptide (EC 2.7.7.6) (RNA polymerase II subunit
5) [Arabidopsis thaliana]
Length = 176
Score = 202 bits (493), Expect = 2e-52
Identities = 93/171 (54%), Positives = 124/171 (72%)
Frame = -2
Query: 576 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 397
MF+HI LE + LHP++FG L E + KL DVEGTC+G++GFV+A+T ID IG GLI+
Sbjct: 1 MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60
Query: 396 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFC 217
G GFV +PVKY+ VVFRPFKGE+L+ +VT VNK+G FA+ GP++ F+S H IPD MEF
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120
Query: 216 PNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYLGXV 64
+ P Y + IQ+E +RLKI+GTRVDA+ IF +GT+ D+LG +
Sbjct: 121 AG-DMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVI 170
>At4g14660.1 68417.m02254 RNA polymerase Rpb7 N-terminal
domain-containing protein similar to SP|P52433
DNA-directed RNA polymerase II 19 kDa polypeptide (EC
2.7.7.6) (RPB7) {Rattus norvegicus}; contains Pfam
profile PF03876: RNA polymerase Rpb7, N-terminal domain
Length = 178
Score = 90.2 bits (214), Expect = 1e-18
Identities = 49/138 (35%), Positives = 84/138 (60%), Gaps = 3/138 (2%)
Frame = -2
Query: 462 TGKYGFVIAVTQIDNIGAGLIQHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMF 283
T + G+ +AVT +D IG G I+ G V++PV + + F+ FKGE++ G+V +V K G+F
Sbjct: 43 TKELGYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVF 102
Query: 282 AQIGPLK-CFISHHSIPDYMEFCPNVNPPCYKSKQEDSVIQEEDVIRLKIVGTR-VDASG 109
+ GP++ ++S+ +PDY ++ P NP K S IQ E +R+ ++G + ++
Sbjct: 103 MRCGPIENVYLSYTKMPDY-KYIPGENPIFMNEK--TSRIQVETTVRVVVIGIKWMEVER 159
Query: 108 IF-AIGTLIGDYLGXVPQ 58
F A+ +L GDYLG + +
Sbjct: 160 EFQALASLEGDYLGPLSE 177
>At3g22900.1 68416.m02886 RNA polymerase Rpb7 N-terminal
domain-containing protein weak similarity to SP|P52433
DNA-directed RNA polymerase II 19 kDa polypeptide (EC
2.7.7.6) (RPB7) {Rattus norvegicus}; contains Pfam
profile PF03876: RNA polymerase Rpb7, N-terminal domain
Length = 174
Score = 79.0 bits (186), Expect = 3e-15
Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 3/134 (2%)
Frame = -2
Query: 462 TGKYGFVIAVTQIDNIGAGLIQHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMF 283
T G++I T ++NIG G I+ G + +PV + + F+ FKGE++ G+V +V+K G+F
Sbjct: 42 TKDLGYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVF 101
Query: 282 AQIGPLK-CFISHHSIPDYMEFCPNVNPPCYKSKQEDSVIQEEDVIRLKIVGT--RVDAS 112
+ GP + ++SH +P Y EF P NP + Q S IQ +R ++ T R
Sbjct: 102 LKSGPYEIIYLSHMKMPGY-EFIPGENP--FFMNQYMSRIQIGARVRFVVLDTEWREAEK 158
Query: 111 GIFAIGTLIGDYLG 70
A+ ++ GD LG
Sbjct: 159 DFMALASIDGDNLG 172
>At1g06790.2 68414.m00722 RNA polymerase Rpb7 N-terminal
domain-containing protein similar to SP|P35718
DNA-directed RNA polymerase III 25 kDa polypeptide (EC
2.7.7.6) {Saccharomyces cerevisiae}; contains Pfam
profile PF03876: RNA polymerase Rpb7, N-terminal domain
Length = 189
Score = 50.4 bits (115), Expect = 1e-06
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 1/133 (0%)
Frame = -2
Query: 576 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 397
MFY LEH + + P L + +K L G +++ I ++ G +
Sbjct: 1 MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60
Query: 396 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFC 217
G G Y V + VVFRPF GEV+ + + G+ +G F +P +
Sbjct: 61 PGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLG----FFDDIYVPAPLMPK 116
Query: 216 PN-VNPPCYKSKQ 181
PN P Y KQ
Sbjct: 117 PNRCEPDPYNRKQ 129
>At1g06790.1 68414.m00723 RNA polymerase Rpb7 N-terminal
domain-containing protein similar to SP|P35718
DNA-directed RNA polymerase III 25 kDa polypeptide (EC
2.7.7.6) {Saccharomyces cerevisiae}; contains Pfam
profile PF03876: RNA polymerase Rpb7, N-terminal domain
Length = 204
Score = 50.4 bits (115), Expect = 1e-06
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 1/133 (0%)
Frame = -2
Query: 576 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 397
MFY LEH + + P L + +K L G +++ I ++ G +
Sbjct: 1 MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60
Query: 396 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFC 217
G G Y V + VVFRPF GEV+ + + G+ +G F +P +
Sbjct: 61 PGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLG----FFDDIYVPAPLMPK 116
Query: 216 PN-VNPPCYKSKQ 181
PN P Y KQ
Sbjct: 117 PNRCEPDPYNRKQ 129
>At4g14520.2 68417.m02238 DNA-directed RNA polymerase II-related
contains similarity to Swiss-Prot:P38421 DNA-directed
RNA polymerase II 19 kDa polypeptide (EC 2.7.7.6) (RNA
polymerase II subunit 5) [Arabidopsis thaliana]
Length = 200
Score = 41.1 bits (92), Expect = 7e-04
Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 11/127 (8%)
Frame = -2
Query: 576 MFYHISLEHEILLHPKYF-GPQLLETVKQKLYTDV--EGTCTGKYGFVIAVTQIDNIGAG 406
MF + + ++ + K+ G + + +L D+ E C ++GF + +T + +IG
Sbjct: 1 MFSEVEMARDVAICAKHLNGQSPHQPILCRLLQDLIHEKACR-EHGFYLGITALKSIGNN 59
Query: 405 LIQ-------HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLK-CFIS 250
H + +PV + F P +G++L G V +V G F + GPL+ ++S
Sbjct: 60 KNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYLS 119
Query: 249 HHSIPDY 229
+P Y
Sbjct: 120 LLKMPHY 126
>At4g14520.1 68417.m02237 DNA-directed RNA polymerase II-related
contains similarity to Swiss-Prot:P38421 DNA-directed
RNA polymerase II 19 kDa polypeptide (EC 2.7.7.6) (RNA
polymerase II subunit 5) [Arabidopsis thaliana]
Length = 200
Score = 41.1 bits (92), Expect = 7e-04
Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 11/127 (8%)
Frame = -2
Query: 576 MFYHISLEHEILLHPKYF-GPQLLETVKQKLYTDV--EGTCTGKYGFVIAVTQIDNIGAG 406
MF + + ++ + K+ G + + +L D+ E C ++GF + +T + +IG
Sbjct: 1 MFSEVEMARDVAICAKHLNGQSPHQPILCRLLQDLIHEKACR-EHGFYLGITALKSIGNN 59
Query: 405 LIQ-------HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLK-CFIS 250
H + +PV + F P +G++L G V +V G F + GPL+ ++S
Sbjct: 60 KNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYLS 119
Query: 249 HHSIPDY 229
+P Y
Sbjct: 120 LLKMPHY 126
>At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial
(ATPC) identical to SP|Q96250 ATP synthase gamma chain,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase
Length = 325
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Frame = -2
Query: 474 EGTCTGKYGFVIAVTQ-IDNIGAGLIQHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVN 298
+G C G V+ V++ + + AG + Q FV+ K KA++FR K +++ VT++N
Sbjct: 114 KGLCGGINSTVVKVSRALYKLNAGPEKEVQ-FVIVGEKAKAIMFRDSKNDIVLS-VTELN 171
Query: 297 KVGM-FAQIGPL 265
K + +AQ+ L
Sbjct: 172 KNPLNYAQVSVL 183
>At1g74600.1 68414.m08641 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 895
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3
Query: 468 CLPHQCIASV*LSPIVVDRNISDVTKFRAPMKCGRTFFSGGQITISIPFN 617
CL ++ + S+ +SP R +S VT FR + +F S + S PFN
Sbjct: 3 CLANESLNSLKISPFSTSRLLSSVTNFRNQL----SFSSKDSSSSSAPFN 48
>At2g44800.1 68415.m05575 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to flavonol synthase SP|Q96330
{Arabidopsis thaliana}, SP|Q07512 {Petunia hybrida};
contains Pfam profile PF03171: oxidoreductase,
2OG-Fe(II) oxygenase family
Length = 357
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = -2
Query: 258 FISHHSIP--DYMEFCPNVNPPCYKSK 184
FI H+S P +++ P+ NPPCYK K
Sbjct: 144 FIKHYSHPLSKWIDMWPS-NPPCYKDK 169
>At5g28770.2 68418.m03535 bZIP transcription factor family protein
similar to seed storage protein opaque-2(bZIP
family)GI:168428 from Zea mays; contains Pfam profile
PF00170: bZIP transcription factor; identical to cDNA
bZIP protein BZO2H3 GI:10954098
Length = 314
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +2
Query: 254 IKHLRG--PICANMPTLFTCVTIPSKTSPLNGLNTTALYLT 370
+K L G P+ NMP + + V++PS+TS N +TT+ +T
Sbjct: 232 VKRLTGFNPMFHNMPQIVSTVSLPSETS--NSPDTTSSQVT 270
>At5g28770.1 68418.m03534 bZIP transcription factor family protein
similar to seed storage protein opaque-2(bZIP
family)GI:168428 from Zea mays; contains Pfam profile
PF00170: bZIP transcription factor; identical to cDNA
bZIP protein BZO2H3 GI:10954098
Length = 307
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +2
Query: 254 IKHLRG--PICANMPTLFTCVTIPSKTSPLNGLNTTALYLT 370
+K L G P+ NMP + + V++PS+TS N +TT+ +T
Sbjct: 225 VKRLTGFNPMFHNMPQIVSTVSLPSETS--NSPDTTSSQVT 263
>At1g65200.1 68414.m07392 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1101
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 363 YKAVVFRPFKGEVLDGIVTQVNK 295
Y++ + RP K +LDGIV NK
Sbjct: 668 YRSYILRPMKELILDGIVYMENK 690
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,487,815
Number of Sequences: 28952
Number of extensions: 332717
Number of successful extensions: 838
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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