Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_H08
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    25   6.5  
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    25   8.7  

>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 32  LRLKIHKYTFNVDYKLT*TLFGLNKTGGVITSKQHVW 142
           LR+ + KY    D K+   LF L+K  G      H W
Sbjct: 559 LRISVQKYETFEDLKVNTHLFRLDKPNGPPKYIHHFW 595


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
 Frame = -3

Query: 481 KFRIRSCNCQIISFQNSPLFRFNSK*VLSLHFYICGRRIAVDEQ*RISRV*AQRDANKCV 302
           +F+++ C   +  F NSPL++ +   VLS+ FY C   +   +  +   +  Q +  +  
Sbjct: 55  EFQLQRC---MEKFLNSPLYQLDENAVLSI-FYDCFFFLKEQQTLKFIIIVFQSEIQENE 110

Query: 301 YKHRSFRST------ISVLKRIENNDFYQCFVSSRHTLV*IAY 191
           Y  R   ST      I  +K+ ++      F S R+ L  + Y
Sbjct: 111 YCLRLLASTGFIPVLIKAMKQFKDRSENVAFTSFRYALFLVYY 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,736
Number of Sequences: 5004
Number of extensions: 48190
Number of successful extensions: 84
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)