Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_H08
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46633| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.078
SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16)                   29   2.9  
SB_30990| Best HMM Match : RhoGEF (HMM E-Value=2.1)                    28   5.1  
SB_46871| Best HMM Match : PAN (HMM E-Value=1)                         28   6.8  

>SB_46633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 34.3 bits (75), Expect = 0.078
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = -3

Query: 520 STIETSRMTVELFKFRIRSCNCQIISFQNSPLFRF 416
           ST  T+RM  +LF FRIR  + +I +  N+ LFRF
Sbjct: 79  STRITNRMNTQLFLFRIRLSSTRITNRMNTQLFRF 113



 Score = 30.7 bits (66), Expect = 0.97
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -3

Query: 520 STIETSRMTVELFKFRIRSCNCQIISFQNSPLFRF 416
           ST  T+RM  +LF FRIR  + +I +  N+ LF F
Sbjct: 59  STRITNRMNKQLFLFRIRLSSTRITNRMNTQLFLF 93


>SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16)
          Length = 896

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +2

Query: 290 SVFVNAFISVSLCSNPTYTLL-LIHGNATATNIKMQ*EHLLTVEAEQ 427
           S+ + +FI V+  +N T TL+ +IH NA + +IK   EH++    EQ
Sbjct: 68  SLHLQSFI-VNATTNLTLTLVAVIHYNADSKSIKKHSEHVVKYRVEQ 113


>SB_30990| Best HMM Match : RhoGEF (HMM E-Value=2.1)
          Length = 261

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 416 EAEQRAVLKTND-LTVTRSYSKFK*FNCHSARFYCTRKDVXXYCPCRQTSI 565
           +A+Q A  K  D +TVT  +S      C S R+Y   +++   C   Q+ +
Sbjct: 80  DAQQSAFEKLKDAVTVTPYFSALIKMTCSSLRYYNLDEEITLQCDASQSGL 130


>SB_46871| Best HMM Match : PAN (HMM E-Value=1)
          Length = 525

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +2

Query: 50  KYTFNVDYKLT*TLFGLNKTGGVITSKQHVWTFFLHNNDSIGDRIRTV-RDSYQCMS*RY 226
           K+  +++ KLT T  G +    ++T K +   + + +NDS+   I+ V R +Y     R 
Sbjct: 81  KWCHSLNVKLTLTKSGQHVCELIVTDKYNHSEYLVQDNDSVHLGIKIVKRSNYPKAQGRL 140

Query: 227 KTL 235
           KTL
Sbjct: 141 KTL 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,443,345
Number of Sequences: 59808
Number of extensions: 374670
Number of successful extensions: 685
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)