Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_H06
(446 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 28 0.75
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 27 1.3
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 26 3.0
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 25 5.3
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 25 7.0
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 24 9.3
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 24 9.3
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 24 9.3
SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 24 9.3
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 24 9.3
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 27.9 bits (59), Expect = 0.75
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 398 KSQHETRVGDSVVGQYSLLESDGTK 324
K+ ++ VGDS+ G YS+LE+ G +
Sbjct: 395 KAIRDSMVGDSIHGLYSILETSGAE 419
>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 27.1 bits (57), Expect = 1.3
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 264 VLAHDGVESRVSISSVVDSALSTVRFQERVLSY 362
+LAH +E V IS++ + ++ RFQ R LS+
Sbjct: 461 ILAHGEIEVTVPISTIYVAPVNIRRFQGRDLSF 493
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.8 bits (54), Expect = 3.0
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 286 NPE*ASAA*STVRLVPSDSKREYCPTTLSPTRVSCWLLTSPV 411
NP A S + +PSDS + T SPT + ++ SP+
Sbjct: 98 NPSNPHADVSKIDRLPSDSSESHVATPSSPTISNSFVSVSPL 139
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 25.0 bits (52), Expect = 5.3
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +2
Query: 128 KLRDRNPSERHEQQRLSGLQERSQRN--EPRARPPQSGPERECVQERGPCARRR*IQSEH 301
+LR R+PS + R ERS R PR R P+ + R P RR + H
Sbjct: 112 RLRSRSPSPHEARSRSPYNDERSDRRSMSPRYRSRSRSPDG---RSRSPDYDRRSPKRNH 168
Query: 302 QQRS 313
+ S
Sbjct: 169 RSPS 172
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 24.6 bits (51), Expect = 7.0
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -1
Query: 413 HTGDVKSQHETRVGDSVVGQYSLLESDGTKRTVDYAADAHSGFNAVV 273
+TG +K HE R D+V + +E + K +A H + V
Sbjct: 82 YTGRIKDIHEVRGKDNVGAKMDFMELEREKGITIQSAATHCTWERTV 128
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 24.2 bits (50), Expect = 9.3
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -1
Query: 362 VGQYSLLESDGTKRTVDYAADAHSGFNAVVRKDPALVHTPVLAHSAVVA 216
+GQY+ L+S+ K + D +S + K P+L+ + + H V+A
Sbjct: 346 LGQYNYLDSNRRKCIKLTSLDTYSLLVLEIMKHPSLLISAISQHFWVLA 394
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 24.2 bits (50), Expect = 9.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 167 QRLSGLQERSQRNEPRARPPQSGPERECVQE 259
+ LS L ERS +PRA G E+E Q+
Sbjct: 731 RELSNLNERSITIDPRAEEQAQGLEQEQGQD 761
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 24.2 bits (50), Expect = 9.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 442 PASXTACQTPTPATSRASTRPASV 371
P S A +TP ++S A RP SV
Sbjct: 254 PYSPPANETPASSSSSAKARPVSV 277
>SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 24.2 bits (50), Expect = 9.3
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +2
Query: 131 LRDRNPSERHEQQRLSGLQERSQRN 205
L R+P + + +++ +QER +RN
Sbjct: 67 LNSRHPEKLQKLRKMKAMQERQERN 91
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 24.2 bits (50), Expect = 9.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 352 YCPTTLSPTRVSCWLLTSPVWG 417
YC +TL+ T VS L T+P G
Sbjct: 80 YCGSTLTATEVSSSLCTTPCPG 101
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,343,410
Number of Sequences: 5004
Number of extensions: 21664
Number of successful extensions: 86
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -