SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_H06
         (446 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.14 
SB_45809| Best HMM Match : Vicilin_N (HMM E-Value=4.5)                 31   0.43 
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.43 
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.43 
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.57 
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)                 30   0.76 
SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)                     30   1.0  
SB_52412| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_16982| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_36280| Best HMM Match : Dehydrin (HMM E-Value=4.4)                  29   1.8  
SB_16838| Best HMM Match : TolA (HMM E-Value=2)                        29   1.8  
SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)                 29   1.8  
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)                 29   1.8  
SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_29502| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)                    29   2.3  
SB_2460| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_54706| Best HMM Match : Linker_histone (HMM E-Value=0.014)          28   3.1  
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_47024| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)                 28   4.0  
SB_51163| Best HMM Match : Adeno_PIX (HMM E-Value=0.96)                28   4.0  
SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_21618| Best HMM Match : Yip1 (HMM E-Value=1.1)                      28   4.0  
SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)               27   5.3  
SB_34735| Best HMM Match : NUDIX (HMM E-Value=6.1)                     27   5.3  
SB_31651| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)             27   5.3  
SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)                     27   5.3  
SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1)                        27   5.3  
SB_1355| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.3  
SB_52016| Best HMM Match : Cystatin (HMM E-Value=0.87)                 27   5.3  
SB_32980| Best HMM Match : DEAD (HMM E-Value=0)                        27   5.3  
SB_22132| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)                27   5.3  
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_49900| Best HMM Match : GETHR (HMM E-Value=5e-18)                   27   7.1  
SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_12095| Best HMM Match : Vicilin_N (HMM E-Value=0.083)               27   7.1  
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_645| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   7.1  
SB_35402| Best HMM Match : Collagen (HMM E-Value=0.39)                 27   7.1  
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_26185| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_9492| Best HMM Match : Rho_N (HMM E-Value=2.1e-12)                  27   7.1  
SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_24118| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.3  

>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
 Frame = +2

Query: 107 KERHRPTKLRDRNPSERHEQQRLSGLQE---RSQRNEPRARPPQSGPEREC---VQERGP 268
           + ++   K R+R   ER +QQ+L   +E   R Q+ E + R  +    ++     QER  
Sbjct: 177 RSQNEERKRREREQKEREKQQKLDMEKEERRRRQQEEEKKRREEEEKRKKVEKEKQEREK 236

Query: 269 CARRR*IQSEHQQRSRQCA*YRQIP 343
            A++   + + QQR+ Q    R+IP
Sbjct: 237 AAKKNIKRQQQQQRTDQQQYPREIP 261


>SB_45809| Best HMM Match : Vicilin_N (HMM E-Value=4.5)
          Length = 215

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 107 KERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRAR 220
           +ER R +K RDR+   R   +R S   ER  R + R+R
Sbjct: 33  RERRRRSKSRDRDSRSRTSSRRRSRSSERRHRKDDRSR 70


>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1711

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 107  KERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRAR 220
            +ER R +K RDR+   R   +R S   ER  R + R+R
Sbjct: 1603 RERRRRSKSRDRDSRSRTSSRRRSRSSERRHRKDDRSR 1640


>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 942

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
 Frame = +2

Query: 113 RHRPTKLRDRNPS--ERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR* 286
           R R TK + ++PS   R  + R S   ER  R   R+R P+S   R   +      RRR 
Sbjct: 312 RERNTKRKSKSPSLERRRSRARRSRSIERRDRRRSRSRSPRSSLGRSRRRSSSRNRRRRR 371

Query: 287 IQSEHQQRSR-QCA*YRQIPREST 355
            +S+    ++ QC   +++ R  +
Sbjct: 372 SRSKSPLNTKSQCEKEQRVSRSKS 395


>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1572

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 137  DRNPSERHEQQRLSG-LQERSQRNEPRARPPQSGPERECVQERGPCA 274
            D  PS   E     G +Q + +R   R+ PP++G + + + ERGP A
Sbjct: 1340 DSEPSHAKESASGRGSVQAKKRRTSSRSVPPRAGEDPKAMIERGPDA 1386


>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
          Length = 440

 Score = 30.3 bits (65), Expect = 0.76
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +2

Query: 107 KERHRPTKLRDRNPSE--RHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARR 280
           K R R  + R R+P +  R  ++R    ++RS+    R+R P+ G      + R P  RR
Sbjct: 191 KSRSRSPRKRSRSPRKMLRSPRKRSRTPRKRSRSPRKRSRSPRKGSHTPKKRSRSP--RR 248

Query: 281 R*IQSEHQQRSR 316
                 H++RSR
Sbjct: 249 N--SQRHKERSR 258



 Score = 27.5 bits (58), Expect = 5.3
 Identities = 20/84 (23%), Positives = 34/84 (40%)
 Frame = +2

Query: 101 SPKERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARR 280
           SP++R R  + R R+P +R    R      + +   PR R  Q   ER         +R 
Sbjct: 210 SPRKRSRTPRKRSRSPRKRSRSPRKGSHTPKKRSRSPR-RNSQRHKERSRYHRSRSRSRH 268

Query: 281 R*IQSEHQQRSRQCA*YRQIPRES 352
           R  +S      +    +++  R+S
Sbjct: 269 RRSRSNSPSMRKSDRKFKKSQRKS 292



 Score = 26.6 bits (56), Expect = 9.3
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +2

Query: 101 SPKERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEP--RARPPQSGPERECVQERGPCA 274
           SP++  R  + R R P +R    R      R   + P  R+R P+   +R   +ER    
Sbjct: 203 SPRKMLRSPRKRSRTPRKRSRSPRKRSRSPRKGSHTPKKRSRSPRRNSQRH--KERSRYH 260

Query: 275 RRR*IQSEHQQRSR 316
           R R  +S H +RSR
Sbjct: 261 RSR-SRSRH-RRSR 272


>SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)
          Length = 1072

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +2

Query: 107  KERHRPTKLRDRNPS-ERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR 283
            +E  +  K ++R    ER  +QR    +E   R   R+      P R   + + P +RRR
Sbjct: 997  EEEEKKEKEQEREKERERLREQREKEREETRMRARDRSGDRARSPPRGRARSKSPVSRRR 1056

Query: 284  *IQSEHQQRSR 316
               S  + RSR
Sbjct: 1057 ASPSRSRSRSR 1067


>SB_52412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 143 NPSERHEQQRLSGLQERSQRNEPRARPPQSGP 238
           NPS++ +++ +    E  +R EP    P++GP
Sbjct: 397 NPSQKKDEEEMEEEDEEEEREEPDEPEPETGP 428


>SB_16982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1031

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 149 SERHEQQRLSGLQERSQRNEPRARPPQSGPER 244
           SER  ++R SGLQERS+    R+R P+    R
Sbjct: 203 SERTRKRRHSGLQERSRDRIARSRSPRRSRAR 234


>SB_36280| Best HMM Match : Dehydrin (HMM E-Value=4.4)
          Length = 426

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 21/70 (30%), Positives = 29/70 (41%)
 Frame = +2

Query: 110 ERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR*I 289
           ER RP+ L  R+ SER    R+S    RS  +   +      P R    +R   AR R  
Sbjct: 47  ERKRPSSL-GRDSSERRPSARVSSDNSRSPPHRRDSSRRSHSPSRRSSDDRSTDARDRRD 105

Query: 290 QSEHQQRSRQ 319
           +     R R+
Sbjct: 106 RRRSSSRERR 115


>SB_16838| Best HMM Match : TolA (HMM E-Value=2)
          Length = 371

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +2

Query: 107 KERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQ-SGPERECVQER 262
           +++ R  + + R P +R +QQ+    Q++SQ+ + + +P Q S  ++E  Q R
Sbjct: 82  QQQQRRQQQQKRQPQQRRQQQQQRQPQQKSQQQQQQQQPQQPSHGQQEPHQRR 134


>SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)
          Length = 792

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 23/59 (38%), Positives = 30/59 (50%)
 Frame = +2

Query: 107 KERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR 283
           +ER RP  +RDR      E +R     +R+ R   RAR  +   ERE V+ER P  R R
Sbjct: 524 QERDRP--VRDRETYRDRELER-----DRADRERERARDTRRDRERERVRER-PRERER 574


>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
          Length = 1463

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +2

Query: 101 SPKERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERG 265
           SP+ R R    R R+P    ++ R  G ++R  R+  R R    G +R+  +++G
Sbjct: 448 SPRRRSRSPGHRSRSPRRGRDRDRDRG-RDRRDRDRDRDRDRDRGRDRDRDKDKG 501


>SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 22/82 (26%), Positives = 34/82 (41%)
 Frame = +2

Query: 110 ERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR*I 289
           ER R  K R+R      E++R    +   +R   R R  +   ERE  +ER     R   
Sbjct: 205 ERQRE-KERERERERERERERERERERERERERERERERERERERERERERERERERERE 263

Query: 290 QSEHQQRSRQCA*YRQIPREST 355
           +   ++R R+   Y  +   ST
Sbjct: 264 RERERERERERKRYACVSETST 285


>SB_29502| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 697

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 21/70 (30%), Positives = 29/70 (41%)
 Frame = +2

Query: 110 ERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR*I 289
           ER RP+ L  R+ SER    R+S    RS  +   +      P R    +R   AR R  
Sbjct: 47  ERKRPSSL-GRDSSERRPSVRVSSDNSRSPPHRRDSSRRSHSPSRRSSDDRSTDARDRRD 105

Query: 290 QSEHQQRSRQ 319
           +     R R+
Sbjct: 106 RRRSSSRERR 115


>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
          Length = 2128

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
 Frame = +2

Query: 104  PKERHRPTKLRDRNPS----ERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPC 271
            PKE  R    R R PS    +RHE +R  G  E  +R +   R      ER+  + R   
Sbjct: 1595 PKEEPRQGTERRREPSLRHDDRHEDRRSEGRPEDYERRDEERR---REAERKGERPREEF 1651

Query: 272  ARRR*IQSEHQQRS-RQCA*YRQIPREST 355
             R+    S+  QRS R+   Y +  RE +
Sbjct: 1652 ERKSERSSQRSQRSLREGERYYEERREES 1680


>SB_2460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 16/68 (23%), Positives = 30/68 (44%)
 Frame = +2

Query: 101 SPKERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARR 280
           S K     T++R  + S     ++  G +ERS  +E  A+P +   E    +E+     +
Sbjct: 464 SNKSSSNGTQMRSNSGSLSQNWRKQEGRKERSGSDETEAKPSEVAAEETVAEEKVNSEEK 523

Query: 281 R*IQSEHQ 304
             ++S  Q
Sbjct: 524 SSVESAEQ 531


>SB_54706| Best HMM Match : Linker_histone (HMM E-Value=0.014)
          Length = 323

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 131 LRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPER 244
           L++RN S     QR      R  RN+P+ RPP S P +
Sbjct: 80  LKERNGSSLKSLQR-----NRQLRNQPQRRPPNSQPRK 112


>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1560

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 110  ERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPE 241
            E H     R R   +   QQR+  L+ R Q ++ + RP    P+
Sbjct: 994  EEHVTELNRQREEKDTSHQQRVKELERRKQHHQSQLRPTLGHPQ 1037



 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 110  ERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPE 241
            E H     R R   +   QQR+  L+ R Q ++ + RP    P+
Sbjct: 1130 EEHVTELNRQREEKDTSHQQRVKELERRKQHHQSQLRPTLGHPQ 1173


>SB_47024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 107 KERHRPTKL-RDRNPSERHEQQRLSGLQER-SQRNEPRARPPQSGPERECVQERG 265
           K +H   +L R+R   ER E++ L  LQ R  + +E  AR      ERE  +E G
Sbjct: 740 KRKHEEARLQREREARER-EERELRELQRREEEEHESLAREEGERAERESQREAG 793


>SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
          Length = 583

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/64 (20%), Positives = 27/64 (42%)
 Frame = +2

Query: 128 KLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR*IQSEHQQ 307
           +L +  P E    +  S  +   ++     RP +    +E  QE+    +R   +  H++
Sbjct: 425 RLEEERPEEERTHEERSHKERSQEKRSHEKRPHEERSHKERSQEKRSHEKRPHEERSHEE 484

Query: 308 RSRQ 319
           RS +
Sbjct: 485 RSEE 488


>SB_51163| Best HMM Match : Adeno_PIX (HMM E-Value=0.96)
          Length = 772

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = +3

Query: 162 SNNG*VGYRSDHSGMSQGRDHRRVGQNGSVYKSGVLAHDGVESRVSISSVVDSALS 329
           S N  +G+ S      QG DH   G+NG + + G LA+ G+ S  SI  ++   L+
Sbjct: 456 SFNSALGHLSSSKINLQGNDHANYGENG-INELGQLANTGL-SDSSIQRLIGQLLA 509


>SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
 Frame = -3

Query: 291 WIQRRRAQGPRSCTHSRSGPLCGGRALGSF--RCD-RSCSPLSR-CCSWRSLGLRSRSFV 124
           W +R   QG      S  G   GGR  G F   CD RS    +R  C     G R     
Sbjct: 82  WRERDHGQGGSRRNESSHGGYRGGRNQGGFGGSCDERSYRDGTRVSCDDGGFGSRGNKGA 141

Query: 123 GLWRS 109
           G W+S
Sbjct: 142 GRWKS 146


>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3464

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -1

Query: 443  TSFSYGVSDPHTGDVKSQHETRVGDSVVGQYSLLES 336
            TS +  +SD H+G  + + + ++GDS + + S + S
Sbjct: 2740 TSIAEELSDRHSGSSEVEEDIKIGDSSISEASEIRS 2775


>SB_21618| Best HMM Match : Yip1 (HMM E-Value=1.1)
          Length = 338

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -3

Query: 204 FRCDRSCSP-LSR-CCSWRSLGLRSR 133
           F CDR+C+P  SR CC  + L  RSR
Sbjct: 268 FACDRACAPTCSRACCRSQYLAARSR 293


>SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1653

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
 Frame = +2

Query: 104 PKERHRP-----TKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERE 247
           P+ R RP     +  RD  P  R  + R  G +ER     PR+   QS  + E
Sbjct: 615 PRSRERPRSRERSDRRDERPQRRGSRGRSPGRREREGERRPRSAERQSRRQDE 667


>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3474

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 443  TSFSYGVSDPHTGDVKSQHETRVGDSVVGQYSLLESDGTKRTVDYA 306
            T  + G +   T D  S ++   GDSV  +Y+ L  D T++  DYA
Sbjct: 1276 TKVTRGNNASVTLDASSSYDPDTGDSVGLRYTWLCRDRTEKLPDYA 1321


>SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)
          Length = 450

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +2

Query: 101 SPKERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARR 280
           SP++R    +    +P +R    R   +  R + N PR R P S  +R  +  R P + R
Sbjct: 276 SPRQRSNSPRRVPVSPRQRSNSPRRVPVSPRQRSNSPR-RVPVSPRQRPNLPRRVPLSSR 334

Query: 281 R 283
           +
Sbjct: 335 Q 335


>SB_34735| Best HMM Match : NUDIX (HMM E-Value=6.1)
          Length = 431

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 219 RALGSFRCDRSCSPLSRCCS 160
           R L SFRC +S    S CCS
Sbjct: 310 RCLNSFRCKQSLEKHSECCS 329


>SB_31651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 827

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 113 APLGYAHGAIATPLAHAGPLAYSAPLAHDVAYGAHGI 3
           AP G    A+A  + H    AY A +AHD +YG +G+
Sbjct: 177 APDGEQSKAMADIIEHF-KWAYVAAIAHDGSYGQYGV 212


>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
          Length = 1531

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 107 KERHRPTKLRDRNPSERHE--QQRLSGLQERSQRNEPRARPPQSGPERE 247
           +ER R  +  DR P +RHE     ++G    SQ +  R R    GP+RE
Sbjct: 522 REREREGRHMDRGPRDRHEGDYTEVTGGSRWSQGDRDRDR----GPDRE 566


>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
          Length = 693

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +2

Query: 134 RDRNPSERHEQQRLSGLQ---ERSQRNEPRARPPQSGPERECVQERGPCARRR*IQSEHQ 304
           RDRN  + ++++R    +   E+ +R++ R +  +   ERE  +ER     R   +S H+
Sbjct: 613 RDRNREKENDREREKEREKEKEKEERDKEREKEKEKEKEREKEKEREREKERDRDKSSHK 672

Query: 305 QR 310
           +R
Sbjct: 673 KR 674


>SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1)
          Length = 256

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +2

Query: 137 DRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR*IQSEHQQRSR 316
           DR     H + R    ++R    + +  P    P+R+  +ER   AR R      + RSR
Sbjct: 155 DRQRPSPHRRSRPRNRKDRQLDKKTKTLPNSYAPKRDKPRERKKVARDRSRSPRSRSRSR 214

Query: 317 Q 319
           +
Sbjct: 215 E 215


>SB_1355| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 219 RALGSFRCDRSCSPLSRCCS 160
           R L SFRC +S    S CCS
Sbjct: 183 RCLNSFRCKQSLEKHSECCS 202


>SB_52016| Best HMM Match : Cystatin (HMM E-Value=0.87)
          Length = 212

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +2

Query: 137 DRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR*IQSEHQQRSR 316
           +RN + RH   +LS  Q+R +R+  R  PP   P R    +RG     R   SE    S+
Sbjct: 139 ERNHT-RHVSYQLSNYQQRVRRSSDREAPP---PPRRRSSDRGMTTPTRRRSSEKGPASQ 194

Query: 317 Q 319
           +
Sbjct: 195 K 195


>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 985

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = -3

Query: 264  PRSCTHSRSGPLCGGRALG--SFRCDRSCSPLSRCCSWRSLGLRSRSFVG 121
            P  C H + GP C  +++G   F C     P    C  + +G   +SF G
Sbjct: 898  PFPCPHYQGGPACECKSMGYTPFACPH--YPGGPACKCQCMGQHQQSFQG 945


>SB_22132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/62 (24%), Positives = 34/62 (54%)
 Frame = +2

Query: 134 RDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR*IQSEHQQRS 313
           + + P  + +QQ+   L+++ Q+ +PR +  Q  P  +  Q++ P  +++  Q   QQ+ 
Sbjct: 69  QQQQPRLQQQQQQQPRLKQQQQQ-QPRLKQQQQQPRLKQQQQQQPRLKQQQQQPRLQQQQ 127

Query: 314 RQ 319
           +Q
Sbjct: 128 QQ 129


>SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
          Length = 510

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +2

Query: 161 EQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR*IQSEHQQRSR 316
           +QQR   L+   Q +E R       P  E V +     R+R +  +HQ+ S+
Sbjct: 324 QQQRRRELEREEQGSEQRELDTSGSPAHELVHKLSSKKRKR-VSGDHQKPSK 374


>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1069

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 445 TPASXTACQTPTPATSRASTRPASVTA 365
           TP+  T+  +P  A+ ++STRP   TA
Sbjct: 189 TPSGSTSPTSPNNASPQSSTRPGETTA 215


>SB_49900| Best HMM Match : GETHR (HMM E-Value=5e-18)
          Length = 1044

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 258 SCTHSRSGPLCGGRALGSFRCDRSCS 181
           +C+HS  G LCG  + G +R    C+
Sbjct: 293 TCSHSYEGVLCGACSRGYYRMFSGCN 318


>SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 723

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 24/91 (26%), Positives = 41/91 (45%)
 Frame = +3

Query: 87  GSVSVAQRSAIGQRSSVTVTQVSAMSNNG*VGYRSDHSGMSQGRDHRRVGQNGSVYKSGV 266
           GS+S    SAI ++ S++    SA+S  G +  R   +   +G    R   +  + +  +
Sbjct: 513 GSISSRLCSAISRQGSISSRLCSAISRQGSISSRLSSAISRRGSMSSRSSSDVGI-QGSI 571

Query: 267 LAHDGVESRVSISSVVDSALSTVRFQERVLS 359
           L+    E +V   S+  S  S V  QE + S
Sbjct: 572 LSRPNSEFKVQ-GSISSSPSSDVGGQEPISS 601


>SB_12095| Best HMM Match : Vicilin_N (HMM E-Value=0.083)
          Length = 501

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +2

Query: 113 RHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCAR 277
           R R   L++   +   E+Q  + +QER++++  RAR   +  +R+ ++E   C R
Sbjct: 302 RRRLKALQEAEQALEEERQCRTKMQERAEQSVERAREEMTDWKRQ-IEELSGCCR 355


>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 101 SPKERHRPTKLRDRNPSERHEQQRL-SGLQERSQRNEPRARPPQSGPERECVQER 262
           SP  R   ++ R R+P  RH + R  +  + RS+ + P  +  +   ++E  ++R
Sbjct: 250 SPHHRSHRSRSRSRSPRRRHSRSRSPTHRRHRSRSHSPEKKKHKKKEKKEKDEKR 304


>SB_645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +2

Query: 173 LSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR*IQSEHQQRSRQ 319
           +S  Q+RS+ + P  R     P R   + R P  RR   +S      RQ
Sbjct: 122 ISYFQQRSKSSSPSRRARSRSPGRRRSRSRSPARRRTAARSSPSPPKRQ 170


>SB_35402| Best HMM Match : Collagen (HMM E-Value=0.39)
          Length = 657

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +3

Query: 93  VSVAQRSAIGQRSSV---TVTQVSAMSNNG*VGYRSDHSGMSQGRDHRRVGQNGSVYKSG 263
           ++ AQ ++ GQ ++       QVS M+  G  G     + M QG    ++GQ G + + G
Sbjct: 182 IATAQVNSGGQSATALGSNSAQVSNMAKGGLAGQGGQMNQMRQGGQMNQMGQGGQMNQMG 241


>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1393

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +2

Query: 107  KERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGP 268
            + R     +R R    R E+ R+   +ER ++ E + R  +   +RE   E GP
Sbjct: 1210 RRRDEDEAIRRREEMRRREEDRIREEEERRKQEELKLRLQEEARQRERTDE-GP 1262


>SB_26185| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 107 KERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQER 262
           K+R    K RD++      +   S   +R +R+E R + P+S  ERE  ++R
Sbjct: 231 KKREEEKKDRDKDKDREDRKSSSSRESKRERRSEEREKRPRS-RERERSRDR 281



 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +2

Query: 107 KERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQER 262
           K+R +     DR  S   E +R    +ER +R   R R      ER   +ER
Sbjct: 238 KDRDKDKDREDRKSSSSRESKRERRSEEREKRPRSRERERSRDRERSRDRER 289


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 21/73 (28%), Positives = 29/73 (39%)
 Frame = +2

Query: 101  SPKERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARR 280
            SP+ R R     D +P  R E  R    +    R    A PP+    R+  +   P  RR
Sbjct: 832  SPRRRRRSASGSDSSPHRRSESPRDRRRRSPEHRRRREASPPR----RDRKRYDSPPRRR 887

Query: 281  R*IQSEHQQRSRQ 319
            R   S   +R R+
Sbjct: 888  RRSPSPPPRRRRR 900


>SB_9492| Best HMM Match : Rho_N (HMM E-Value=2.1e-12)
          Length = 1970

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 219 RALGSFRCDRSCSPLSRCC 163
           R L SFRC++S    S CC
Sbjct: 564 RCLNSFRCEQSLEKHSECC 582


>SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2671

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 110 PLGYAHGAIATPLAHAGPLAYSAPLAHDVAYGAHGI 3
           P G    A+A  + H    +Y A +AHD +YG HG+
Sbjct: 182 PDGEQSKAMADIIDHFN-WSYVAAVAHDGSYGQHGV 216


>SB_24118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
 Frame = +2

Query: 119 RPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR*IQ-- 292
           RPT+  +    ++ +QQ+    Q+ +Q N+ + +  Q   +    Q++ P  ++   Q  
Sbjct: 507 RPTQAPNSGQQQQQQQQQQENNQQYNQGNQQQQQDSQQNRQPGGQQQQQPEQQQTNSQLQ 566

Query: 293 -SEHQQRSRQCA*YRQIPREST 355
             ++ Q   Q   Y Q P  S+
Sbjct: 567 SQQYNQNQEQAPLYSQYPTLSS 588


>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2848

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 128  KLRDRNPSERHEQQRLSGLQERSQRNE 208
            +L + + SE +E+QR   LQE+ +RN+
Sbjct: 1626 RLEEASRSEEYERQRQLELQEKERRNK 1652


>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/60 (20%), Positives = 32/60 (53%)
 Frame = +2

Query: 140 RNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR*IQSEHQQRSRQ 319
           +   ++ +QQ+    Q++ Q+ + +   PQ   +++  QE+    +++  Q + QQ+ +Q
Sbjct: 16  KQQQQQQQQQQQQQQQQQQQQQQQQQPQPQQQQQQQQEQEQQQQQQQQQQQQQQQQQQQQ 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,087,340
Number of Sequences: 59808
Number of extensions: 203475
Number of successful extensions: 1175
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -