Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_H06
         (446 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             29   0.031
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   1.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.0  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   6.1  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   6.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 28.7 bits (61), Expect = 0.031
 Identities = 13/51 (25%), Positives = 29/51 (56%)
 Frame = +2

Query: 116  HRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGP 268
            H   K + + P ++ +QQ+    Q++SQ  +P+ + PQ   +++  Q++ P
Sbjct: 1495 HSSQKTQQQQPQQQQQQQQQQQPQQQSQ--QPQQQQPQPQQQQQQQQQQQP 1543



 Score = 21.0 bits (42), Expect = 6.1
 Identities = 10/49 (20%), Positives = 24/49 (48%)
 Frame = +2

Query: 122 PTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGP 268
           P +    + S   + Q  +  Q++ Q+ + + +  Q   +++  Q+RGP
Sbjct: 810 PHQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQRGP 858


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 234 PLCGGRALGSFRCDRSCSPLSRCCS 160
           P CG   +  F CD S S LS  C+
Sbjct: 47  PFCGPNVINPFFCDMSPS-LSLLCA 70


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = -1

Query: 116 GAPLGYAHGAIATPLAHAGPLAYSAPLAHD 27
           G   GY H      +AH G   Y   L H+
Sbjct: 238 GKSFGYNHVLKLHQVAHYGEKVYKCTLCHE 267


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -3

Query: 234 PLCGGRALGSFRCDRS 187
           P CG   +  F CD S
Sbjct: 46  PFCGPNVINPFFCDMS 61


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +2

Query: 149 SERHEQQRLSGLQERSQRNEPRARPPQ 229
           SE H  ++    ++      PR  PPQ
Sbjct: 206 SEEHGNKKKKNKEDEDDGATPRKAPPQ 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,906
Number of Sequences: 438
Number of extensions: 1723
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)