Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_H06
(446 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g51840.1 68416.m05685 short-chain acyl-CoA oxidase identical ... 32 0.20
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 31 0.35
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 30 0.62
At5g58880.1 68418.m07377 hypothetical protein 29 1.9
At1g28420.1 68414.m03494 homeobox transcription factor, putative... 28 2.5
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 28 3.3
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 28 3.3
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc... 28 3.3
At3g09010.1 68416.m01055 protein kinase family protein contains ... 28 3.3
At5g41320.1 68418.m05022 expressed protein 27 4.4
At3g62010.1 68416.m06964 expressed protein 27 5.8
At4g25520.1 68417.m03680 transcriptional co-regulator family pro... 27 7.6
At4g19590.1 68417.m02879 DNAJ heat shock N-terminal domain-conta... 27 7.6
At2g27285.1 68415.m03279 expressed protein weak similarity to ma... 27 7.6
At1g67530.1 68414.m07694 armadillo/beta-catenin repeat family pr... 27 7.6
>At3g51840.1 68416.m05685 short-chain acyl-CoA oxidase identical to
Short-chain acyl CoA oxidase [Arabidopsis thaliana]
GI:5478795; contains InterPro entry IPR006089: Acyl-CoA
dehydrogenase
Length = 436
Score = 31.9 bits (69), Expect = 0.20
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 316 TVRLVPSDSKRE-YCPTTLSPTRVSCWLLTSPVWGSD 423
T+ L S++++E Y P+ V+CW LT P GSD
Sbjct: 146 TIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSD 182
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 31.1 bits (67), Expect = 0.35
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = +2
Query: 101 SPKER--HRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCA 274
SP+ R H P + R R+P RH + G R Q P R P + P A
Sbjct: 271 SPRRRRIHSPFRSRSRSPIRRHRRPTHEG---RRQSPAPSRRRRSPSPPARRRRSPSPPA 327
Query: 275 RRR*IQSEHQQRSR 316
RRR S +R R
Sbjct: 328 RRRRSPSPPARRHR 341
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 30.3 bits (65), Expect = 0.62
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +2
Query: 107 KERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR* 286
KER + + R+R ER ++R + S+RN R R + G E + RRR
Sbjct: 166 KERVKERERREREDGERDRREREK--ERGSRRNRERERSREVGNEESDDDVKRDLKRRRK 223
Query: 287 IQSEHQQRSRQ 319
E +++ R+
Sbjct: 224 EGGERKEKERE 234
Score = 29.9 bits (64), Expect = 0.82
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +2
Query: 107 KERHRPTKLRDRNPSERHEQQRLSG-----LQERSQRNEPRARPPQSGPERECVQERGPC 271
KE+ R + RD++ +R ++R S ++E +R++ R + G RE ++RG
Sbjct: 75 KEKERERRRRDKDRVKRRSERRKSSDSEDDVEEEDERDKRRVNEKERG-HREHERDRGKD 133
Query: 272 ARRR*IQSEHQQRSRQ 319
+R + E + + R+
Sbjct: 134 RKRDREREERKDKERE 149
Score = 26.6 bits (56), Expect = 7.6
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +2
Query: 107 KERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPER--ECVQERGPCARR 280
KER RDR + +++R + +R + R R + ER E V+ER RR
Sbjct: 119 KERGHREHERDRGKDRKRDREREERKDKEREREKDRERREREREEREKERVKER---ERR 175
Query: 281 R*IQSEHQQRSRQ 319
E +R R+
Sbjct: 176 EREDGERDRRERE 188
>At5g58880.1 68418.m07377 hypothetical protein
Length = 1088
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 131 LRDRNPSER--HEQQRLSGLQERSQRNEPRARPPQSGPERECV 253
+RD +R H+ + SG+ + + +EP + P++ P+++CV
Sbjct: 540 VRDEESRKRMSHQYESRSGIGSKEENSEPSTK-PEAKPDQDCV 581
>At1g28420.1 68414.m03494 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7 GI:19486
[Lycopersicon peruvianum]
Length = 1703
Score = 28.3 bits (60), Expect = 2.5
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +2
Query: 134 RDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR*IQSEHQQRS 313
R E H + L L+ + ++NE R R ERE +E R R + E QR
Sbjct: 370 RGSETRENHGPKDLEKLEIQRKKNEERMRKEMERNERERRKEEERLMRERIKEEERLQRE 429
Query: 314 RQ 319
++
Sbjct: 430 QR 431
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 27.9 bits (59), Expect = 3.3
Identities = 23/82 (28%), Positives = 34/82 (41%)
Frame = +2
Query: 107 KERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR* 286
+ER P R R +++ RLS +R R R P++G R +G R
Sbjct: 216 RERTSPDYGRGRRSPSPYKRARLSPDYKRDDRRRERVASPENGAVRNRSPRKGRGESRSP 275
Query: 287 IQSEHQQRSRQCA*YRQIPRES 352
E ++ SR Y + RES
Sbjct: 276 PPYEKRRESRSPPPYEK-RRES 296
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 27.9 bits (59), Expect = 3.3
Identities = 23/82 (28%), Positives = 34/82 (41%)
Frame = +2
Query: 107 KERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR* 286
+ER P R R +++ RLS +R R R P++G R +G R
Sbjct: 216 RERTSPDYGRGRRSPSPYKRARLSPDYKRDDRRRERVASPENGAVRNRSPRKGRGESRSP 275
Query: 287 IQSEHQQRSRQCA*YRQIPRES 352
E ++ SR Y + RES
Sbjct: 276 PPYEKRRESRSPPPYEK-RRES 296
>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 570
Score = 27.9 bits (59), Expect = 3.3
Identities = 24/82 (29%), Positives = 34/82 (41%)
Frame = +2
Query: 104 PKERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR 283
P R+ + RDR PS R +R + RS PR R P R R P RR
Sbjct: 443 PDRRNFQDRNRDRYPSNRSYSERSPRGRFRSP---PRRRSPPRYNRRRRSTSRSPDGYRR 499
Query: 284 *IQSEHQQRSRQCA*YRQIPRE 349
++ + +S + Q PR+
Sbjct: 500 RLRDGSRSQSPRHRSRSQSPRK 521
>At3g09010.1 68416.m01055 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 393
Score = 27.9 bits (59), Expect = 3.3
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +3
Query: 195 HSGMSQGRDHR----RVGQNGSVYKSGVLAHD-GVESRVSISSVVDSALS 329
+ G+++GR+HR RVGQ GS +S D G S V S +S +S
Sbjct: 334 YRGVNRGRNHRGIGLRVGQGGSSQESSSTQRDKGKSSAVPQGSTSNSNIS 383
>At5g41320.1 68418.m05022 expressed protein
Length = 515
Score = 27.5 bits (58), Expect = 4.4
Identities = 16/68 (23%), Positives = 31/68 (45%)
Frame = +2
Query: 119 RPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR*IQSE 298
RP K R + E++ +E ++ +E +++P +SG E +E+ +
Sbjct: 159 RPVKKRMTKKKKEEEEKMKKKEEEETKESEKQSKPGESGLEMYIPEEKSS-------EIA 211
Query: 299 HQQRSRQC 322
H R R+C
Sbjct: 212 HNGRDREC 219
>At3g62010.1 68416.m06964 expressed protein
Length = 1254
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 249 VYKSGVLAHDGVESRVSISSVVDSALSTVRFQERVLSY 362
++K L +GVESR ++ +V+D + +E VL Y
Sbjct: 728 LWKITRLFDNGVESREALDAVIDRCSALQNIREAVLQY 765
>At4g25520.1 68417.m03680 transcriptional co-regulator family
protein contains similarity to GP|18033922|gb|AAL57277
SEUSS transcriptional co-regulator [Arabidopsis
thaliana]
Length = 748
Score = 26.6 bits (56), Expect = 7.6
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +2
Query: 113 RHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR*IQ 292
R L+ +PS+R + Q+ L+++ Q+ + PP P E G CAR+ +
Sbjct: 142 RQHQQMLQSMSPSQRLQLQQQQQLRQQLQQQGTQQIPPNVRP-----YEVGVCARKLMMY 196
Query: 293 SEH-QQR-SRQCA*Y 331
H QQR + C Y
Sbjct: 197 LYHLQQRPAENCITY 211
>At4g19590.1 68417.m02879 DNAJ heat shock N-terminal
domain-containing protein protein YJL162c, Saccharomyces
cerevisiae, PIR2:S56945; contains Pfam PF00226: DnaJ
domain;
Length = 345
Score = 26.6 bits (56), Expect = 7.6
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 107 KERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARP-PQSGPERE 247
+++ +P K P ++ QQ+ Q++ N+PR P Q P+ E
Sbjct: 131 RKQKQPPKKPPNQPKQQPNQQKQPPDQQKQPPNQPRQPPNQQKQPQNE 178
>At2g27285.1 68415.m03279 expressed protein weak similarity to maebl
(GI:20087019) [Plasmodium falciparum], chimeric
erythrocyte-binding protein MAEBL (GI:22086284)
[Plasmodium falciparum]
Length = 323
Score = 26.6 bits (56), Expect = 7.6
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +2
Query: 110 ERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERG 265
E KL ++ +E+ E+QR + E ++ R + PE+E + G
Sbjct: 193 EAKEAEKLEEQRKAEKLEEQRKAEKLEELRKEVTRVEKKRKSPEKEVSPDSG 244
>At1g67530.1 68414.m07694 armadillo/beta-catenin repeat family
protein / U-box domain-containing family protein
contains Pfam domain, PF00514:
Armadillo/beta-catenin-like repeats and Pfam, PF04564:
U-box domain
Length = 782
Score = 26.6 bits (56), Expect = 7.6
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Frame = +2
Query: 146 PSERHEQQRLSGL--QERSQRNEP---RARPPQSGPERE 247
P R + Q+L L +ER QR++P R PPQ P R+
Sbjct: 692 PRGREKSQKLLMLFREERQQRDQPSSNRDEPPQKEPARK 730
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,419,841
Number of Sequences: 28952
Number of extensions: 129861
Number of successful extensions: 559
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -