Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_H05
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1322 + 26131395-26131599,26132382-26132468,26133119-261333...    36   0.039
05_01_0324 + 2549354-2549482,2550092-2550493,2550789-2551727           29   4.4  

>08_02_1322 +
           26131395-26131599,26132382-26132468,26133119-26133372,
           26133430-26133526,26133613-26133693,26133782-26133976,
           26134093-26134182,26134296-26134471,26134565-26134687,
           26134799-26134945,26135027-26135163,26135247-26135364,
           26135462-26135518
          Length = 588

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
 Frame = -3

Query: 428 CGKPKNIDDANEAELQTICQMYWHRIYNLEGDKYELERAIEIR--KMEISDLNSQVNDLR 255
           C K   +D  N   L    Q Y  ++ +LE  + ++++A+EI     ++ D+     +L+
Sbjct: 483 CTKVLELDSQNVKALYRRAQAYM-QLADLELAEVDIKKALEIDPDNRQVLDVKLTYKNLK 541

Query: 254 GKFVKPTLKKVSKYENKFAKLQKKAAE 174
            K  +   K    Y N FAK+ K+ AE
Sbjct: 542 EKVKEYNKKDAKFYSNMFAKMTKQPAE 568


>05_01_0324 + 2549354-2549482,2550092-2550493,2550789-2551727
          Length = 489

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = -3

Query: 326 ELERAIEIRKMEISDLNSQVNDLR--GKFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQL 153
           EL RA+++RK  ++D    +  LR   K V   L+K+ KYE       +   E     QL
Sbjct: 19  ELRRAVKLRKKLMTDDERLIYSLRRAKKKVALLLQKLKKYELPDLPAPRHDPELLTAEQL 78

Query: 152 KVVKKKEF 129
           +  KK  F
Sbjct: 79  QAYKKIGF 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,893,176
Number of Sequences: 37544
Number of extensions: 176445
Number of successful extensions: 539
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)