Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_H05
         (670 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29083| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)        30   2.0  
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        29   2.6  
SB_10658| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)           29   3.4  
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_38418| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_29083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
 Frame = -3

Query: 350 YNLEGDKYELERAIEI---RKMEISDLNSQVNDLRGKF--VKPTLKKVSKYENKFAKLQK 186
           Y ++ D  +LER +EI   +  ++  L  +   L+ +   ++   +KVSKYE+     +K
Sbjct: 49  YRIKAD--QLERDVEILNEKNEQLQGLAEESQQLKDEMDVLRHMQEKVSKYESTIDMYKK 106

Query: 185 KAAEF-NFRNQLKVVKKKEFT 126
           K  E  + R Q+K +++K  T
Sbjct: 107 KLEELSDMRKQMKAMEEKNVT 127


>SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = -3

Query: 347 NLEGDKYELERAIEIRKMEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAAEFN 168
           ++   K  L     IRK + +  NS+ +    K ++P L  +SK E    KL KK   FN
Sbjct: 49  HIRKSKNTLANPKHIRKFQNTFANSKTHSQIQKHIRPRLPPISK-EGSVTKLPKKTLVFN 107


>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
          Length = 3071

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = -3

Query: 335 DKYELERAIEIRKMEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKA-AEFNFRN 159
           D+ +L + IE+   +++  N ++N +R        +KV + +NK AKLQ +  A    R+
Sbjct: 474 DRDDLRKEIEVISTKLTTTNEKLN-IRENERADLERKVMESDNKLAKLQSQLDAALTARD 532

Query: 158 QLK 150
           +LK
Sbjct: 533 RLK 535


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = -3

Query: 359 HRIYNLEGDKYELERAIEIRKMEISDLNSQVNDLRGKFVKPTLKKVSKYEN-KFAKLQKK 183
           H I  L+    E E+ IE+RK ++   +  + +L+ + +   L+K  K +N +   ++ K
Sbjct: 415 HEIAELKEKLQESEKVIELRKKDLGKKDKTIEELKERII--VLEKSLKDKNDEIFGIEGK 472

Query: 182 AAEFNFRN 159
            AE   +N
Sbjct: 473 IAELEAKN 480


>SB_10658| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -3

Query: 224 VSKYENKFAKLQKKAAEFNFR-NQLK 150
           V KYEN+   LQ+K  EF+F+ N++K
Sbjct: 13  VEKYENEVTVLQEKIKEFDFKTNEIK 38


>SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)
          Length = 2040

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = -3

Query: 356 RIYNLEGDKYELERAIEIRKMEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAA 177
           +++NL    ++L   +     ++ DLN++VNDL  K V     KV     K   L  K  
Sbjct: 303 KLHNLNTKLHDLNTKVHDLNTKLHDLNTKVNDLNTK-VHDFNTKVHDLNTKVHDLNTKLH 361

Query: 176 EFN 168
           + N
Sbjct: 362 DLN 364



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -3

Query: 356 RIYNLEGDKYELERAIEIRKMEISDLNSQVNDLRGKFVKPTLK--KVSKYENKFAKLQKK 183
           ++++L    ++L   +     ++ DLN++VNDL  K  K   +  KV+    K   L  K
Sbjct: 352 KVHDLNTKLHDLNTKVHDLNAKVHDLNTKVNDLNTKNTKVNDQNTKVNDLNTKVHDLNAK 411

Query: 182 AAEFN 168
             + N
Sbjct: 412 VHDLN 416


>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2193

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
 Frame = -3

Query: 335  DKYELE-RAIEIR---KMEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAA 177
            DK ELE + IE+    K+++++L ++ NDLR   VK       KYE +  +L++  A
Sbjct: 1962 DKNELENKIIELTNQYKLKLAELENE-NDLRNSRVKNLENLCKKYEKQIQELREHNA 2017


>SB_38418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 293 EISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKK 183
           EI     +V++L+G+F K  +  + + +  F KLQ K
Sbjct: 112 EIEGFFDEVHELKGQFNKYKMNTIPRLQEVFKKLQSK 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,465,687
Number of Sequences: 59808
Number of extensions: 206172
Number of successful extensions: 551
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)