Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_H05
(670 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039041-9|AAB94188.2| 194|Caenorhabditis elegans Troponin i pr... 101 3e-22
AB107583-1|BAD89381.1| 194|Caenorhabditis elegans troponin I 4 ... 101 3e-22
Z81593-2|CAB04737.1| 260|Caenorhabditis elegans Hypothetical pr... 97 8e-21
AB107359-1|BAD89380.1| 260|Caenorhabditis elegans troponin I 3 ... 97 8e-21
U40951-3|AAG01564.2| 242|Caenorhabditis elegans Uncoordinated p... 95 4e-20
AB107357-1|BAD89378.1| 242|Caenorhabditis elegans troponin I 2 ... 95 4e-20
Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical pr... 93 2e-19
AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1 ... 93 2e-19
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot... 33 0.18
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr... 32 0.42
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr... 32 0.42
U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t pro... 32 0.42
U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t pro... 32 0.42
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein. 32 0.42
U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z73973-5|CAA98267.2| 882|Caenorhabditis elegans Hypothetical pr... 29 3.9
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 29 3.9
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 29 3.9
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 29 3.9
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 29 3.9
AF016442-7|AAB65920.1| 481|Caenorhabditis elegans Hypothetical ... 28 6.9
Z81486-5|CAB03987.1| 570|Caenorhabditis elegans Hypothetical pr... 27 9.1
>AF039041-9|AAB94188.2| 194|Caenorhabditis elegans Troponin i
protein 4 protein.
Length = 194
Score = 101 bits (243), Expect = 3e-22
Identities = 65/166 (39%), Positives = 86/166 (51%), Gaps = 1/166 (0%)
Frame = -3
Query: 617 DRKRAEVRKRMEEASXXXXXXKGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 438
+RK+ EVRKR+EEAS KGF+TP
Sbjct: 16 ERKKEEVRKRLEEASRMKKAKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQRIL 75
Query: 437 XXRCGKPKNIDDANEAELQTICQMYWHRIYNLEGDKYELERAIEIRKMEISDLNSQVNDL 258
R ++D NE +L+ + R+ +LE + Y++ + + EI++L VNDL
Sbjct: 76 QERIIPLPDLD--NEDDLEAVYDEIRERLIDLESENYDVSYIVRQKDFEINELTIAVNDL 133
Query: 257 RGKFVKPTLKKVSKYENKFAKLQKK-AAEFNFRNQLKVVKKKEFTL 123
RGKFVKPTLKKVSK E KF KL+KK A + +FR QLKVV K EF L
Sbjct: 134 RGKFVKPTLKKVSKTEGKFDKLKKKEATKVDFRAQLKVVDKNEFAL 179
>AB107583-1|BAD89381.1| 194|Caenorhabditis elegans troponin I 4
protein.
Length = 194
Score = 101 bits (243), Expect = 3e-22
Identities = 65/166 (39%), Positives = 86/166 (51%), Gaps = 1/166 (0%)
Frame = -3
Query: 617 DRKRAEVRKRMEEASXXXXXXKGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 438
+RK+ EVRKR+EEAS KGF+TP
Sbjct: 16 ERKKEEVRKRLEEASRMKKAKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQRIL 75
Query: 437 XXRCGKPKNIDDANEAELQTICQMYWHRIYNLEGDKYELERAIEIRKMEISDLNSQVNDL 258
R ++D NE +L+ + R+ +LE + Y++ + + EI++L VNDL
Sbjct: 76 QERIIPLPDLD--NEDDLEAVYDEIRERLIDLESENYDVSYIVRQKDFEINELTIAVNDL 133
Query: 257 RGKFVKPTLKKVSKYENKFAKLQKK-AAEFNFRNQLKVVKKKEFTL 123
RGKFVKPTLKKVSK E KF KL+KK A + +FR QLKVV K EF L
Sbjct: 134 RGKFVKPTLKKVSKTEGKFDKLKKKEATKVDFRAQLKVVDKNEFAL 179
>Z81593-2|CAB04737.1| 260|Caenorhabditis elegans Hypothetical
protein T20B3.2 protein.
Length = 260
Score = 97.5 bits (232), Expect = 8e-21
Identities = 61/160 (38%), Positives = 82/160 (51%), Gaps = 1/160 (0%)
Frame = -3
Query: 611 KRAEVRKRMEEASXXXXXXKGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 432
K+AEVRKRMEEA+ KGF+TP
Sbjct: 31 KKAEVRKRMEEAAKKGSKKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQKTLQQ 90
Query: 431 RCGKPKNIDDANE-AELQTICQMYWHRIYNLEGDKYELERAIEIRKMEISDLNSQVNDLR 255
R ++D N+ +L I + + R+ LE +K+++ + + EI+ L QVNDLR
Sbjct: 91 RTIPLPDVDSINDQGQLLKIYEDMFARVCALEEEKFDINFGVSQTEAEINQLTIQVNDLR 150
Query: 254 GKFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKK 135
GKFVKPTLKKVSKY+NKF + + NFRN LKVVKK+
Sbjct: 151 GKFVKPTLKKVSKYDNKFKSSGEVKEKSNFRNNLKVVKKE 190
>AB107359-1|BAD89380.1| 260|Caenorhabditis elegans troponin I 3
protein.
Length = 260
Score = 97.5 bits (232), Expect = 8e-21
Identities = 61/160 (38%), Positives = 82/160 (51%), Gaps = 1/160 (0%)
Frame = -3
Query: 611 KRAEVRKRMEEASXXXXXXKGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 432
K+AEVRKRMEEA+ KGF+TP
Sbjct: 31 KKAEVRKRMEEAAKKGSKKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQKTLQQ 90
Query: 431 RCGKPKNIDDANE-AELQTICQMYWHRIYNLEGDKYELERAIEIRKMEISDLNSQVNDLR 255
R ++D N+ +L I + + R+ LE +K+++ + + EI+ L QVNDLR
Sbjct: 91 RTIPLPDVDSINDQGQLLKIYEDMFARVCALEEEKFDINFGVSQTEAEINQLTIQVNDLR 150
Query: 254 GKFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKK 135
GKFVKPTLKKVSKY+NKF + + NFRN LKVVKK+
Sbjct: 151 GKFVKPTLKKVSKYDNKFKSSGEVKEKSNFRNNLKVVKKE 190
>U40951-3|AAG01564.2| 242|Caenorhabditis elegans Uncoordinated
protein 27 protein.
Length = 242
Score = 95.1 bits (226), Expect = 4e-20
Identities = 59/163 (36%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
Frame = -3
Query: 617 DRKRAEVRKRMEEASXXXXXXKGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 438
+ K+AEVRKR+EEA KGF+TP
Sbjct: 17 EAKKAEVRKRLEEAGNKKKAKKGFLTPERKKKLRKLLMVKAAEDLKRQQLLKEQERQKAL 76
Query: 437 XXRCGKPKNIDDANE-AELQTICQMYWHRIYNLEGDKYELERAIEIRKMEISDLNSQVND 261
R N+D ++ +L+ I W R+ LE +KY++ + + EI+ L +VND
Sbjct: 77 ADRTISLPNVDSIDDKGQLEKIYNDLWARLTQLEEEKYDINYVVSQTEAEINSLTIEVND 136
Query: 260 LRGKFVKPTLKKVSKYENKFAKL--QKKAAEFNFRNQLKVVKK 138
LRGKFVKP+LKKVSKY+NKF K K + +FR LK+VKK
Sbjct: 137 LRGKFVKPSLKKVSKYDNKFKKSGESKAGTKEDFRANLKIVKK 179
>AB107357-1|BAD89378.1| 242|Caenorhabditis elegans troponin I 2
protein.
Length = 242
Score = 95.1 bits (226), Expect = 4e-20
Identities = 59/163 (36%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
Frame = -3
Query: 617 DRKRAEVRKRMEEASXXXXXXKGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 438
+ K+AEVRKR+EEA KGF+TP
Sbjct: 17 EAKKAEVRKRLEEAGNKKKAKKGFLTPERKKKLRKLLMVKAAEDLKRQQLLKEQERQKAL 76
Query: 437 XXRCGKPKNIDDANE-AELQTICQMYWHRIYNLEGDKYELERAIEIRKMEISDLNSQVND 261
R N+D ++ +L+ I W R+ LE +KY++ + + EI+ L +VND
Sbjct: 77 ADRTISLPNVDSIDDKGQLEKIYNDLWARLTQLEEEKYDINYVVSQTEAEINSLTIEVND 136
Query: 260 LRGKFVKPTLKKVSKYENKFAKL--QKKAAEFNFRNQLKVVKK 138
LRGKFVKP+LKKVSKY+NKF K K + +FR LK+VKK
Sbjct: 137 LRGKFVKPSLKKVSKYDNKFKKSGESKAGTKEDFRANLKIVKK 179
>Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical
protein F42E11.4 protein.
Length = 250
Score = 92.7 bits (220), Expect = 2e-19
Identities = 60/165 (36%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
Frame = -3
Query: 617 DRKRAEVRKRMEEASXXXXXXKGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 438
+ K+AEVRKR+EEA GF+TP
Sbjct: 30 EAKKAEVRKRLEEAGQKKQKK-GFLTPERKKKLRKLLMNKAAEDLKTQQLRKEQERVKVL 88
Query: 437 XXRCGKPKNIDDANE-AELQTICQMYWHRIYNLEGDKYELERAIEIRKMEISDLNSQVND 261
R N+D ++ A+L+ I + R+ NLE +KY++ + I+ LN +VND
Sbjct: 89 AERTVALPNVDSIDDHAKLEAIYNDLFSRLCNLEEEKYDINHITTETETTINQLNIEVND 148
Query: 260 LRGKFVKPTLKKVSKYENKFAKL---QKKAAEFNFRNQLKVVKKK 135
LRGKFVKP+LKKVSKY+NKF K+ +K+ N RN LK VKK+
Sbjct: 149 LRGKFVKPSLKKVSKYDNKFKKMAEAKKEDGSKNLRNNLKTVKKE 193
>AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1
protein.
Length = 250
Score = 92.7 bits (220), Expect = 2e-19
Identities = 60/165 (36%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
Frame = -3
Query: 617 DRKRAEVRKRMEEASXXXXXXKGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 438
+ K+AEVRKR+EEA GF+TP
Sbjct: 30 EAKKAEVRKRLEEAGQKKQKK-GFLTPERKKKLRKLLMNKAAEDLKTQQLRKEQERVKVL 88
Query: 437 XXRCGKPKNIDDANE-AELQTICQMYWHRIYNLEGDKYELERAIEIRKMEISDLNSQVND 261
R N+D ++ A+L+ I + R+ NLE +KY++ + I+ LN +VND
Sbjct: 89 AERTVALPNVDSIDDHAKLEAIYNDLFSRLCNLEEEKYDINHITTETETTINQLNIEVND 148
Query: 260 LRGKFVKPTLKKVSKYENKFAKL---QKKAAEFNFRNQLKVVKKK 135
LRGKFVKP+LKKVSKY+NKF K+ +K+ N RN LK VKK+
Sbjct: 149 LRGKFVKPSLKKVSKYDNKFKKMAEAKKEDGSKNLRNNLKTVKKE 193
>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
3, isoform b protein.
Length = 1178
Score = 33.1 bits (72), Expect = 0.18
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Frame = -3
Query: 413 NIDDANEAELQTICQMYWHRIYNLEGDKYELERAIEIRKMEISDLNS---QV--NDLRGK 249
N + ++EL+ + RI LE +KY+LE+ E ++ ++ +LN QV N K
Sbjct: 1043 NASEVPQSELKAKIKELHQRICKLETEKYDLEKRHERQEYDMKELNERQRQVTRNSALKK 1102
Query: 248 FVKPTLKKVSKYENK---FAKLQKKAAEFNFRNQLKVVKKK 135
+ P ++Y K +K ++ NFR + V K+
Sbjct: 1103 GIDPAEVGNTRYPAKVQIVSKYDRQVDRRNFRERRSVFDKR 1143
>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical
protein T10G3.5b protein.
Length = 1203
Score = 31.9 bits (69), Expect = 0.42
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = -3
Query: 338 GDKYELERAI-EIRKMEISDLNSQVNDLRGKFVKPTLKKVSKYENK 204
G + ER++ E + EIS+ +S +NDL+ K + + KK +KY+N+
Sbjct: 426 GSLLDKERSLLEEKNKEISERDSSINDLKEKLAE-SEKKATKYKNE 470
>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical
protein T10G3.5a protein.
Length = 1205
Score = 31.9 bits (69), Expect = 0.42
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = -3
Query: 338 GDKYELERAI-EIRKMEISDLNSQVNDLRGKFVKPTLKKVSKYENK 204
G + ER++ E + EIS+ +S +NDL+ K + + KK +KY+N+
Sbjct: 428 GSLLDKERSLLEEKNKEISERDSSINDLKEKLAE-SEKKATKYKNE 472
>U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t
protein 2, isoform b protein.
Length = 324
Score = 31.9 bits (69), Expect = 0.42
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -3
Query: 356 RIYNLEGDKYELERAIEIRKMEISDLNSQVNDL-RGKFVKPTL 231
RI LEG+KY+LE+ E ++ ++ +LN + + R K +K L
Sbjct: 147 RIVKLEGEKYDLEKRRERQEYDLKELNERQRQVARNKALKKGL 189
>U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t
protein 2, isoform a protein.
Length = 428
Score = 31.9 bits (69), Expect = 0.42
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -3
Query: 356 RIYNLEGDKYELERAIEIRKMEISDLNSQVNDL-RGKFVKPTL 231
RI LEG+KY+LE+ E ++ ++ +LN + + R K +K L
Sbjct: 251 RIVKLEGEKYDLEKRRERQEYDLKELNERQRQVARNKALKKGL 293
>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
Length = 1205
Score = 31.9 bits (69), Expect = 0.42
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = -3
Query: 338 GDKYELERAI-EIRKMEISDLNSQVNDLRGKFVKPTLKKVSKYENK 204
G + ER++ E + EIS+ +S +NDL+ K + + KK +KY+N+
Sbjct: 428 GSLLDKERSLLEEKNKEISERDSSINDLKEKLAE-SEKKATKYKNE 472
>U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical
protein C34F11.5 protein.
Length = 894
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = -3
Query: 257 RGKFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTL 123
RGKFV+P + ++ K+ K KL+K + KV+K+KE L
Sbjct: 649 RGKFVRPLMPRIPKFVAKKKKLKKVDGK-------KVLKRKEIVL 686
>Z73973-5|CAA98267.2| 882|Caenorhabditis elegans Hypothetical
protein F25D1.4 protein.
Length = 882
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = -3
Query: 335 DKYELERAIEIRKMEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQ 156
D E+E +++RK ++D+ + N+L F+ T + KFA L AA+ +F ++
Sbjct: 708 DHVEIEEMLKLRKTMVTDIPALANELSETFLAAT-----ESRRKFAVLTGIAADESFSDK 762
Query: 155 LKVVKK 138
K
Sbjct: 763 FSNFSK 768
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = -3
Query: 407 DDA---NEAELQTICQMYWHRIYN-LEGDKYELERAIEIRKMEISDLNSQVNDLRGKFVK 240
DDA N+A L+ + W Y L+ + E+ R + ++ E +DL + ++DLRG F K
Sbjct: 686 DDAARKNDALLEDVAT--WQEKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDK 743
Query: 239 PT 234
T
Sbjct: 744 LT 745
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = -3
Query: 407 DDA---NEAELQTICQMYWHRIYN-LEGDKYELERAIEIRKMEISDLNSQVNDLRGKFVK 240
DDA N+A L+ + W Y L+ + E+ R + ++ E +DL + ++DLRG F K
Sbjct: 686 DDAARKNDALLEDVAT--WQEKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDK 743
Query: 239 PT 234
T
Sbjct: 744 LT 745
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = -3
Query: 407 DDA---NEAELQTICQMYWHRIYN-LEGDKYELERAIEIRKMEISDLNSQVNDLRGKFVK 240
DDA N+A L+ + W Y L+ + E+ R + ++ E +DL + ++DLRG F K
Sbjct: 446 DDAARKNDALLEDVAT--WQEKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDK 503
Query: 239 PT 234
T
Sbjct: 504 LT 505
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = -3
Query: 407 DDA---NEAELQTICQMYWHRIYN-LEGDKYELERAIEIRKMEISDLNSQVNDLRGKFVK 240
DDA N+A L+ + W Y L+ + E+ R + ++ E +DL + ++DLRG F K
Sbjct: 686 DDAARKNDALLEDVAT--WQEKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDK 743
Query: 239 PT 234
T
Sbjct: 744 LT 745
>AF016442-7|AAB65920.1| 481|Caenorhabditis elegans Hypothetical
protein K12B6.7 protein.
Length = 481
Score = 27.9 bits (59), Expect = 6.9
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = -3
Query: 341 EGDKYELERAIEIRKMEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAAEFNFR 162
E D +E+ I RK+EI N + GKF K ++KK+ + KF KK N
Sbjct: 248 ENDLKNIEKIIRSRKLEIVPGNLSEKNFGGKF-KFSVKKI--FGGKFKFSVKKILAGNSN 304
Query: 161 NQLK 150
Q K
Sbjct: 305 LQCK 308
>Z81486-5|CAB03987.1| 570|Caenorhabditis elegans Hypothetical
protein C53A5.6 protein.
Length = 570
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 293 EISDLNSQV-NDLRGKFVKPTLKKVSKYENKFAKLQKKAAEFNFRN 159
+IS+L+ QV +D+ KF T+K + Y K KL + +F N
Sbjct: 186 KISELSKQVCDDISDKFA-ATIKSLQNYFEKHEKLSPPGRKTHFNN 230
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,940,587
Number of Sequences: 27780
Number of extensions: 149004
Number of successful extensions: 564
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -