Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_H05
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02640.2 68417.m00359 bZIP transcription factor family protei...    29   2.8  
At4g02640.1 68417.m00358 bZIP transcription factor family protei...    29   2.8  
At5g59390.1 68418.m07442 XH/XS domain-containing protein contain...    29   3.7  
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos...    28   4.9  

>At4g02640.2 68417.m00359 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription
           factor; identical to cDNA bZIP protein BZO2H1,
           alternatively spliced GI:10954094
          Length = 417

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 326 ELERAIEIRKME-ISDLNSQVNDLRGKFVKPTLKKVSKYENKF 201
           E  R    RK E  SDL +QVNDL+G+     LK++S   +K+
Sbjct: 233 ESARRSRRRKQEQTSDLETQVNDLKGEH-SSLLKQLSNMNHKY 274


>At4g02640.1 68417.m00358 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription
           factor; identical to cDNA bZIP protein BZO2H1,
           alternatively spliced GI:10954094
          Length = 411

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 326 ELERAIEIRKME-ISDLNSQVNDLRGKFVKPTLKKVSKYENKF 201
           E  R    RK E  SDL +QVNDL+G+     LK++S   +K+
Sbjct: 227 ESARRSRRRKQEQTSDLETQVNDLKGEH-SSLLKQLSNMNHKY 268


>At5g59390.1 68418.m07442 XH/XS domain-containing protein contains
           Pfam domain PF03469: XH domain and PF03468: XS domain
          Length = 561

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 425 GKPKNIDDANEAELQTICQMYWHRIYN-LEGDKYELE 318
           G PK + D N+ +L+T+   Y   +YN +   K E+E
Sbjct: 475 GTPKRVVDENDEKLRTLKNQYGEEVYNEVVRTKLEIE 511


>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
           identical to CIP1 (GI:836950) [Arabidopsis thaliana]
          Length = 1305

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/84 (22%), Positives = 40/84 (47%)
 Frame = -3

Query: 425 GKPKNIDDANEAELQTICQMYWHRIYNLEGDKYELERAIEIRKMEISDLNSQVNDLRGKF 246
           GK K+     E+EL ++ +++     +      ELE  +E  K  +++LN  +N+   + 
Sbjct: 213 GKLKDSHREKESELSSLVEVHETHQRDSSIHVKELEEQVESSKKLVAELNQTLNNAEEE- 271

Query: 245 VKPTLKKVSKYENKFAKLQKKAAE 174
            K   +K+++  N+  + Q    E
Sbjct: 272 KKVLSQKIAELSNEIKEAQNTIQE 295


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,503,378
Number of Sequences: 28952
Number of extensions: 142010
Number of successful extensions: 437
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)