Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_H01
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)             229   2e-60
SB_502| Best HMM Match : DNA_pol3_alpha (HMM E-Value=0)                29   2.5  
SB_37097| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_25372| Best HMM Match : DoxX (HMM E-Value=0.96)                     29   3.3  
SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_33814| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_38123| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score =  229 bits (560), Expect = 2e-60
 Identities = 110/149 (73%), Positives = 125/149 (83%), Gaps = 1/149 (0%)
 Frame = -3

Query: 652  TXDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLT 473
            T DGPS K WRDGRGA QN+IPASTGAAKAVGKVIP +NGKLTGMAFRVPVA+VSVVDLT
Sbjct: 960  TVDGPSAKNWRDGRGAHQNVIPASTGAAKAVGKVIPEVNGKLTGMAFRVPVADVSVVDLT 1019

Query: 472  VRLGKPASYEAIKQKVKEAAEGPLKG-ILGYTEDQVVSSDFIGDSHSSIFDAAAGISLND 296
             RL KPA YE IK  VK+A+E    G  LGYTEDQVVS+DFIG+  SS+FDA AGI LND
Sbjct: 1020 CRLKKPAKYEEIKAVVKKASESKEMGQYLGYTEDQVVSTDFIGERVSSVFDARAGIQLND 1079

Query: 295  NFVKLISWYDNEYGYSSRVIDLIKYIQSK 209
             FVKL++WYDNEYGYS RV+DL++Y+ S+
Sbjct: 1080 KFVKLVTWYDNEYGYSHRVVDLMRYMASR 1108


>SB_502| Best HMM Match : DNA_pol3_alpha (HMM E-Value=0)
          Length = 428

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/69 (28%), Positives = 35/69 (50%)
 Frame = -3

Query: 616 GRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAI 437
           GR A   II   T AAKAV + +  + GK  G+A +  ++ +   ++ + L K    E  
Sbjct: 139 GRDAVSQIITFGTMAAKAVVRDVARVQGKAFGLADK--LSKLIPFEVGITLSKAMEQEPA 196

Query: 436 KQKVKEAAE 410
            ++  E++E
Sbjct: 197 LREFVESSE 205


>SB_37097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 726

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
 Frame = -3

Query: 310 ISLNDNFVKLISWYDNEYGYSSRVI------DLIKYIQSKD*TLDLM 188
           +SL D+F+KL++ +++    S  V       D++K IQSK+  LD+M
Sbjct: 575 VSLTDDFLKLVTTFNDGRQQSDLVASVVERPDVLKRIQSKEAPLDIM 621


>SB_25372| Best HMM Match : DoxX (HMM E-Value=0.96)
          Length = 244

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -3

Query: 508 VPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQV 368
           V  A V+VV     +    S++A K  VK+  E PL   L YT DQ+
Sbjct: 147 VAAAAVAVVVCVGSVCSTISFQAYKTWVKQHGEEPLLPGLNYTNDQL 193


>SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 607 AQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVS 488
           AQ N I    G    +G  I  +NG + GMA    +AN+S
Sbjct: 374 AQMNGIAGMNGIGNGMGNGIGIMNGNMNGMAGISALANLS 413


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 31/97 (31%), Positives = 42/97 (43%)
 Frame = +3

Query: 297  SFKEIPAAASKIEECESPMKSEDTT*SSVYPRMPFKGPSAASLTFCLMAS*LAGFPRRTV 476
            S +  P+AAS  +   S   S  T   SV P     GPSAAS +    +      P+ TV
Sbjct: 1939 STQAAPSAASSTQVAPSMAPSTQTG-HSVTPSTQ-AGPSAASCSQVAQSIVATAPPKPTV 1996

Query: 477  RSTTDTLATGTRNAIPVSLPLRAGITLPTALAAPVEA 587
             STT    + T    P     +  I+L  A ++PV A
Sbjct: 1997 ASTTYQAPSTTTTTHPSQ---QTTISLVQAQSSPVAA 2030


>SB_33814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 607 AQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVS 488
           AQ N I    G    +G  I  +NG + GMA    +AN+S
Sbjct: 63  AQMNGIAGMNGIGNGMGNGIGIMNGNMNGMAGISALANLS 102


>SB_38123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +3

Query: 387 PRMPFKGPSAASLTFCLMAS*LAGFPRRTVR--STTDTLATGTRNAIPVSLPLRAGITLP 560
           P+ P + P+ AS+T    A         T    STT T +T T NAI V  P ++     
Sbjct: 373 PKPPIELPTPASITSSQTAHNTTTLIDTTTSPTSTTSTASTTTANAIRVEEPPKSSFLQE 432

Query: 561 TA 566
           TA
Sbjct: 433 TA 434


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,054,355
Number of Sequences: 59808
Number of extensions: 323187
Number of successful extensions: 770
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)