Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_G24
(777 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 132 2e-31
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 124 5e-29
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 124 9e-29
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 123 1e-28
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 123 1e-28
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 123 1e-28
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 116 2e-26
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 108 4e-24
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 107 8e-24
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 107 8e-24
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 105 2e-23
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 105 3e-23
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 95 6e-20
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 89 2e-18
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 87 9e-18
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 87 1e-17
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 86 3e-17
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 80 1e-15
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 79 3e-15
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 79 4e-15
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 78 6e-15
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 78 6e-15
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 78 7e-15
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 77 1e-14
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 77 2e-14
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 76 2e-14
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 76 3e-14
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 73 3e-13
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 73 3e-13
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 73 3e-13
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 73 3e-13
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 72 5e-13
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 71 1e-12
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 70 2e-12
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 68 8e-12
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 68 8e-12
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 67 1e-11
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 66 2e-11
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 66 2e-11
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 66 2e-11
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 66 3e-11
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 66 3e-11
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 65 4e-11
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 64 7e-11
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 64 1e-10
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 64 1e-10
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 63 2e-10
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 63 2e-10
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 63 2e-10
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 63 2e-10
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 61 7e-10
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 61 9e-10
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 60 2e-09
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 59 3e-09
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 59 3e-09
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 58 6e-09
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 58 6e-09
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 58 9e-09
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 58 9e-09
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 58 9e-09
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 57 1e-08
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 56 3e-08
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 55 6e-08
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 44 9e-05
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 44 1e-04
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 42 3e-04
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 42 5e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 41 8e-04
At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA ... 40 0.002
At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA ... 40 0.002
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 40 0.002
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r... 39 0.004
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila... 35 0.069
At1g12700.1 68414.m01473 helicase domain-containing protein / pe... 34 0.12
At3g43920.1 68416.m04701 ribonuclease III family protein similar... 33 0.21
At2g35340.1 68415.m04333 RNA helicase, putative similar to ATP-d... 33 0.28
At1g32490.1 68414.m04009 RNA helicase, putative similar to ATP-d... 33 0.28
At4g16680.1 68417.m02519 RNA helicase, putative similar to SP|Q1... 32 0.49
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 31 0.64
At5g10370.1 68418.m01203 helicase domain-containing protein / IB... 31 0.64
At4g01020.1 68417.m00137 helicase domain-containing protein / IB... 31 0.64
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 31 0.85
At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative si... 30 1.5
At1g67370.1 68414.m07669 meiotic asynaptic mutant 1 (ASY1) ident... 29 4.5
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 28 6.0
At4g02000.1 68417.m00269 expressed protein low similarity to zin... 28 6.0
At1g33390.1 68414.m04133 helicase domain-containing protein simi... 28 6.0
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi... 28 7.9
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 132 bits (319), Expect = 2e-31
Identities = 59/95 (62%), Positives = 77/95 (81%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
RD VL +F+ G+ I+ ATDVAARGLDV +KYVIN+D+P S EDY+HRIGRTGR+ +KG
Sbjct: 383 RDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKG 442
Query: 596 TSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSM 492
T+Y FFT +N+R AK+L ++LQEA Q +SP+L SM
Sbjct: 443 TAYTFFTVANARFAKELTNILQEAGQKVSPELASM 477
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 124 bits (300), Expect = 5e-29
Identities = 54/98 (55%), Positives = 74/98 (75%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
RD+VL QF+ GR +LVATDVAARGLDV I+ V+N+D+PN EDY+HRIGRTGR+ + G
Sbjct: 512 RDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATG 571
Query: 596 TSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSMADR 483
+Y FF +++ A DL+ +L+ ANQ + PQ++ MA R
Sbjct: 572 LAYTFFGDQDAKHASDLIKILEGANQKVPPQVREMATR 609
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 124 bits (298), Expect = 9e-29
Identities = 55/95 (57%), Positives = 74/95 (77%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
RD VL +FK GR I+ ATDVAARGLDV IK V+N+D+PN+ EDYIHRIGRTGR+ +KG
Sbjct: 449 RDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKG 508
Query: 596 TSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSM 492
++ FFT N++ A++LV +LQEA Q++ P L ++
Sbjct: 509 MAFTFFTHDNAKFARELVKILQEAGQVVPPTLSAL 543
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 123 bits (297), Expect = 1e-28
Identities = 54/98 (55%), Positives = 73/98 (74%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
RD VL QF+ GR +LVATDVAARGLDV I+ V+N+D+PN EDY+HRIGRTGR+ + G
Sbjct: 441 RDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATG 500
Query: 596 TSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSMADR 483
++ FF +S+ A DL+ +L+ ANQ + PQ++ MA R
Sbjct: 501 QAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMATR 538
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 123 bits (297), Expect = 1e-28
Identities = 54/98 (55%), Positives = 73/98 (74%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
RD VL QF+ GR +LVATDVAARGLDV I+ V+N+D+PN EDY+HRIGRTGR+ + G
Sbjct: 441 RDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATG 500
Query: 596 TSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSMADR 483
++ FF +S+ A DL+ +L+ ANQ + PQ++ MA R
Sbjct: 501 QAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMATR 538
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 123 bits (297), Expect = 1e-28
Identities = 54/98 (55%), Positives = 73/98 (74%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
RD VL QF+ GR +LVATDVAARGLDV I+ V+N+D+PN EDY+HRIGRTGR+ + G
Sbjct: 441 RDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATG 500
Query: 596 TSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSMADR 483
++ FF +S+ A DL+ +L+ ANQ + PQ++ MA R
Sbjct: 501 QAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMATR 538
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 116 bits (279), Expect = 2e-26
Identities = 51/98 (52%), Positives = 72/98 (73%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
RD VL QF+ G+ +L+ATDVAARGLD+ I+ VIN+D+P EDY+HRIGRTGR+ + G
Sbjct: 718 RDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATG 777
Query: 596 TSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSMADR 483
++ FFT + + A DL+ VL+ ANQ + PQ++ +A R
Sbjct: 778 VAFTFFTEQDWKYAPDLIKVLEGANQQVPPQVRDIAMR 815
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 108 bits (260), Expect = 4e-24
Identities = 51/98 (52%), Positives = 66/98 (67%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R+ L FK GR ILVATDVAARGLD+ + +V+NFD PN +DY+HRIGRTGR+ + G
Sbjct: 444 REVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSG 503
Query: 596 TSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSMADR 483
+ AFF +N+ AK L ++QEANQ + L A R
Sbjct: 504 LATAFFNDNNTTMAKPLAELMQEANQEVPDWLTRYASR 541
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 107 bits (257), Expect = 8e-24
Identities = 50/98 (51%), Positives = 66/98 (67%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R+ L FK GR ILVATDVAARGLD+ + +V+NFD PN +DY+HRIGRTGR+ G
Sbjct: 447 REVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 506
Query: 596 TSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSMADR 483
+ AFF +N++ A+ L ++QEANQ + L A R
Sbjct: 507 IATAFFNENNAQLARSLAELMQEANQEVPEWLTRYASR 544
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 107 bits (257), Expect = 8e-24
Identities = 50/98 (51%), Positives = 66/98 (67%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R+ L FK GR ILVATDVAARGLD+ + +V+NFD PN +DY+HRIGRTGR+ G
Sbjct: 447 REVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 506
Query: 596 TSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSMADR 483
+ AFF +N++ A+ L ++QEANQ + L A R
Sbjct: 507 IATAFFNENNAQLARSLAELMQEANQEVPEWLTRYASR 544
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 105 bits (253), Expect = 2e-23
Identities = 50/98 (51%), Positives = 64/98 (65%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R+ L FK GR ILVATDVAARGLD+ + +V+NFD PN +DY+HRIGRTGR+ G
Sbjct: 457 REVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 516
Query: 596 TSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSMADR 483
+ AFF N+ A+ L ++QEANQ + L A R
Sbjct: 517 LATAFFNDGNTSLARPLAELMQEANQEVPEWLTRYASR 554
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 105 bits (252), Expect = 3e-23
Identities = 49/92 (53%), Positives = 66/92 (71%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R L FKEG +LVATDVAARGLD+ ++ VIN+ +P ++EDY+HRIGRTGR+ KG
Sbjct: 405 RTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKG 464
Query: 596 TSYAFFTPSNSRQAKDLVSVLQEANQMISPQL 501
++ FFTP N A +LV+VL+EA Q++ L
Sbjct: 465 VAHTFFTPLNKGLAGELVNVLREAGQVVPADL 496
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 94.7 bits (225), Expect = 6e-20
Identities = 42/97 (43%), Positives = 64/97 (65%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R+ + FK ++L+AT VAARGLDV ++ V+NFD PN EDY+HR+GRTGR+ KG
Sbjct: 815 RESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKG 874
Query: 596 TSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSMAD 486
+ F + +++ A DLV L+ + Q + L+++AD
Sbjct: 875 CAVTFISEDDAKYAPDLVKALELSEQPVPDDLKALAD 911
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 89.4 bits (212), Expect = 2e-18
Identities = 39/97 (40%), Positives = 65/97 (67%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
+++ + FK ++L+AT VAARGLDV ++ V+NFD PN EDY+HR+GRTGR+ KG
Sbjct: 653 QEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKG 712
Query: 596 TSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSMAD 486
+ F + +++ A DLV L+ + Q + ++++A+
Sbjct: 713 CAVTFISEDDAKYAPDLVKALELSEQPVPDDVKAVAE 749
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 87.4 bits (207), Expect = 9e-18
Identities = 44/98 (44%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R+ + FK G+ +LVATDVA++GLD I++VIN+D P E+Y+HRIGRTGR G
Sbjct: 436 REYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTG 495
Query: 596 TSYAFFTPSNSRQA-KDLVSVLQEANQMISPQLQSMAD 486
+ F + S DL +LQEA Q I P L + D
Sbjct: 496 IATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELND 533
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 87.0 bits (206), Expect = 1e-17
Identities = 44/96 (45%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
RD + FK G+ +LVATDVA++GLD I++VIN+D P E+Y+HRIGRTGR G
Sbjct: 387 RDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTG 446
Query: 596 TSYAFFTPSNSR-QAKDLVSVLQEANQMISPQLQSM 492
+ F + S DL +LQEA Q I P L +
Sbjct: 447 IATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAEL 482
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 85.8 bits (203), Expect = 3e-17
Identities = 42/97 (43%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSK- 600
R E L +FK G +L+ATDVAARGLD+ +K V+N+D + ++HRIGRTGR+ +
Sbjct: 512 RMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRD 571
Query: 599 GTSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSMA 489
G +Y T +R A +LV+ L A Q + P+L +A
Sbjct: 572 GVAYTLVTQREARFAGELVNSLVAAGQNVPPELTDLA 608
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 80.2 bits (189), Expect = 1e-15
Identities = 34/75 (45%), Positives = 52/75 (69%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R+ L F++G +ILVATDVAARGLDV + +I+++ PN++E ++HR GRTGR+ KG
Sbjct: 387 RERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKG 446
Query: 596 TSYAFFTPSNSRQAK 552
++ ++ SR K
Sbjct: 447 SAILIYSQDQSRAVK 461
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 79.0 bits (186), Expect = 3e-15
Identities = 37/92 (40%), Positives = 56/92 (60%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R+ L F+ R ++LVATDV RG+D+ + +VIN+D P E Y HRIGRTGR+ G
Sbjct: 615 REISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSG 674
Query: 596 TSYAFFTPSNSRQAKDLVSVLQEANQMISPQL 501
+ +F T ++ DL +L ++N + P+L
Sbjct: 675 VATSFLTLHDTEVFYDLKQMLVQSNSAVPPEL 706
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 78.6 bits (185), Expect = 4e-15
Identities = 34/77 (44%), Positives = 52/77 (67%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
RD+++ QF+ + +L+A+DV ARG+DV + +VIN+D PN+ E YIHRIGR GR +G
Sbjct: 300 RDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREG 359
Query: 596 TSYAFFTPSNSRQAKDL 546
+ F S+ + KD+
Sbjct: 360 VAINFVKSSDMKDLKDI 376
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 78.2 bits (184), Expect = 6e-15
Identities = 34/95 (35%), Positives = 58/95 (61%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R+ + QF+ G +L+ATDV ARG+D GI VIN+D+P+S+ YIHRIGR+GR+ G
Sbjct: 419 RENAVDQFRAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSG 478
Query: 596 TSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSM 492
+ F+T + +++ + + + + + S+
Sbjct: 479 EAITFYTEQDVPFLRNIANTMMSSGCEVPSWIMSL 513
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 78.2 bits (184), Expect = 6e-15
Identities = 33/77 (42%), Positives = 48/77 (62%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
RD ++ +F+ G +L+ TD+ ARG+DV + VINFD P E+Y+HRIGR+GR KG
Sbjct: 319 RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKG 378
Query: 596 TSYAFFTPSNSRQAKDL 546
+ F T + R D+
Sbjct: 379 VAINFMTSEDERMMADI 395
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 77.8 bits (183), Expect = 7e-15
Identities = 35/75 (46%), Positives = 50/75 (66%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R+ L F++G SILVATDVAARGLDV + VI+++ PN++E ++HR GRTGR+ KG
Sbjct: 399 RERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKG 458
Query: 596 TSYAFFTPSNSRQAK 552
++ +R K
Sbjct: 459 SAILIHGQDQTRAVK 473
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 77.4 bits (182), Expect = 1e-14
Identities = 35/90 (38%), Positives = 56/90 (62%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R+ L F++G+ ++LVATDVA+RGLD+ + VI+++ PN E ++HR GRTGR+ +G
Sbjct: 389 RERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEG 448
Query: 596 TSYAFFTPSNSRQAKDLVSVLQEANQMISP 507
++ T S R + L + + ISP
Sbjct: 449 SAILMHTSSQKRTVRSLERDVGCHFEFISP 478
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 76.6 bits (180), Expect = 2e-14
Identities = 33/77 (42%), Positives = 48/77 (62%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
RD ++ +F+ G +L+ TD+ ARG+DV + VINFD P E+Y+HRIGR+GR KG
Sbjct: 317 RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKG 376
Query: 596 TSYAFFTPSNSRQAKDL 546
+ F T + R D+
Sbjct: 377 VAINFVTRDDERMLFDI 393
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 76.2 bits (179), Expect = 2e-14
Identities = 33/77 (42%), Positives = 48/77 (62%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
RD ++ +F+ G +L+ TD+ ARG+DV + VINFD P E+Y+HRIGR+GR KG
Sbjct: 317 RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKG 376
Query: 596 TSYAFFTPSNSRQAKDL 546
+ F T + R D+
Sbjct: 377 VAINFVTLDDQRMLFDI 393
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 75.8 bits (178), Expect = 3e-14
Identities = 38/95 (40%), Positives = 55/95 (57%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
RD ++ +F+ G +L+ TDV ARG+DV + VIN+D PN+ E YIHRIGR+GR KG
Sbjct: 313 RDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG 372
Query: 596 TSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSM 492
+ F D + +L++ Q S Q+ M
Sbjct: 373 VAINFV-------KSDDIKILRDIEQYYSTQIDEM 400
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 72.5 bits (170), Expect = 3e-13
Identities = 30/71 (42%), Positives = 47/71 (66%)
Frame = -2
Query: 755 FKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 576
FKEG ILVATD+ RG+D++ + VIN+D P+S++ Y+HR+GR GR +KG + F
Sbjct: 334 FKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVA 393
Query: 575 PSNSRQAKDLV 543
++ + + V
Sbjct: 394 SASDSEVLNQV 404
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 72.5 bits (170), Expect = 3e-13
Identities = 30/71 (42%), Positives = 47/71 (66%)
Frame = -2
Query: 755 FKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 576
FKEG ILVATD+ RG+D++ + VIN+D P+S++ Y+HR+GR GR +KG + F
Sbjct: 251 FKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVA 310
Query: 575 PSNSRQAKDLV 543
++ + + V
Sbjct: 311 SASDSEVLNQV 321
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 72.5 bits (170), Expect = 3e-13
Identities = 30/71 (42%), Positives = 47/71 (66%)
Frame = -2
Query: 755 FKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 576
FKEG ILVATD+ RG+D++ + VIN+D P+S++ Y+HR+GR GR +KG + F
Sbjct: 334 FKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVA 393
Query: 575 PSNSRQAKDLV 543
++ + + V
Sbjct: 394 SASDSEVLNQV 404
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 72.5 bits (170), Expect = 3e-13
Identities = 31/71 (43%), Positives = 43/71 (60%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
RD L F E +L+ TDVAARGLD+ GI YV+ +D P + +IHR+GRT R + +G
Sbjct: 308 RDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQG 367
Query: 596 TSYAFFTPSNS 564
+ F P +
Sbjct: 368 RAIVFLMPKET 378
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 71.7 bits (168), Expect = 5e-13
Identities = 31/56 (55%), Positives = 41/56 (73%)
Frame = -2
Query: 764 LYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
L +FK G +ILV TDVA+RGLD+ + VIN+D P +S+DYIHR+GRT R+ G
Sbjct: 303 LNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSG 358
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 70.5 bits (165), Expect = 1e-12
Identities = 31/70 (44%), Positives = 45/70 (64%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R L +FK G+ IL+ATDVA+RGLD+ + VIN+D P DY+HR+GRT R+ G
Sbjct: 341 RLSALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGG 400
Query: 596 TSYAFFTPSN 567
+ + T ++
Sbjct: 401 LAVSIITETD 410
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 69.7 bits (163), Expect = 2e-12
Identities = 36/90 (40%), Positives = 55/90 (61%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R +L F+E + V TD AARG+DV + +VI D+ +S+ D++HRIGRT R+ G
Sbjct: 463 RANILADFRE-TGGVFVCTDAAARGVDVPNVSHVIQADFASSAVDFLHRIGRTARAGQYG 521
Query: 596 TSYAFFTPSNSRQAKDLVSVLQEANQMISP 507
T + +T +N +DLV ++EA +M P
Sbjct: 522 TVTSLYTEAN----RDLVEAIREAVKMGQP 547
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 67.7 bits (158), Expect = 8e-12
Identities = 26/55 (47%), Positives = 39/55 (70%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 612
R+ V ++F+ G LV TD+ RG+D+ + VINFD+P +SE Y+HR+GR+GR
Sbjct: 400 RNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGR 454
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 67.7 bits (158), Expect = 8e-12
Identities = 26/55 (47%), Positives = 39/55 (70%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 612
R+ V ++F+ G LV TD+ RG+D+ + VINFD+P +SE Y+HR+GR+GR
Sbjct: 400 RNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGR 454
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 66.9 bits (156), Expect = 1e-11
Identities = 26/55 (47%), Positives = 38/55 (69%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 612
R+ V + F+ G LV TD+ RG+D+ + VINFD+P +SE Y+HR+GR+GR
Sbjct: 430 RNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGR 484
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 66.5 bits (155), Expect = 2e-11
Identities = 34/98 (34%), Positives = 54/98 (55%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R +V+ F G +LV+T V RG+D+ ++ VI FD P++ ++YIH IGR R KG
Sbjct: 397 RRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKG 456
Query: 596 TSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSMADR 483
T+ F + DLV+ L+ + I +L ++ R
Sbjct: 457 TAIVFVNEDDRNLFPDLVAALKSSGAAIPKELINLTSR 494
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 66.5 bits (155), Expect = 2e-11
Identities = 34/98 (34%), Positives = 54/98 (55%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R +V+ F G +LV+T V RG+D+ ++ VI FD P++ ++YIH IGR R KG
Sbjct: 260 RRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKG 319
Query: 596 TSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSMADR 483
T+ F + DLV+ L+ + I +L ++ R
Sbjct: 320 TAIVFVNEDDRNLFPDLVAALKSSGAAIPKELINLTSR 357
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 66.1 bits (154), Expect = 2e-11
Identities = 30/70 (42%), Positives = 45/70 (64%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R + L F++ L+ATDVAARGLD+ G++ VIN+ P + Y+HR+GRT R+ +G
Sbjct: 451 RLDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREG 510
Query: 596 TSYAFFTPSN 567
+ F T S+
Sbjct: 511 YAVTFVTDSD 520
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 65.7 bits (153), Expect = 3e-11
Identities = 27/67 (40%), Positives = 41/67 (61%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R+ V + F+ G LV TD+ RG+D+ + VINFD+P ++E Y+HR+GR+GR G
Sbjct: 407 RNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLG 466
Query: 596 TSYAFFT 576
+ T
Sbjct: 467 LAVNLIT 473
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 65.7 bits (153), Expect = 3e-11
Identities = 27/67 (40%), Positives = 41/67 (61%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R+ V + F+ G LV TD+ RG+D+ + VINFD+P ++E Y+HR+GR+GR G
Sbjct: 407 RNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLG 466
Query: 596 TSYAFFT 576
+ T
Sbjct: 467 LAVNLIT 473
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 65.3 bits (152), Expect = 4e-11
Identities = 28/70 (40%), Positives = 43/70 (61%)
Frame = -2
Query: 755 FKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 576
FK + ++L++TDVAARGLD ++ +I +D P + +Y+HR+GRT R KG + F
Sbjct: 395 FKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARIGEKGEALLFLQ 454
Query: 575 PSNSRQAKDL 546
P K+L
Sbjct: 455 PIEIDYLKEL 464
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 64.5 bits (150), Expect = 7e-11
Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 6/105 (5%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK-SK 600
R + + F + + IL+ TDVAARGLD+ + ++I +D P+ +YIHR+GRT R + +K
Sbjct: 373 RTKTFFDFMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAK 432
Query: 599 GTSYAFFTPSNSRQAKDL----VSVLQ-EANQMISPQLQSMADRC 480
G + P + + L V V + E N+ +QS ++C
Sbjct: 433 GKALLVLIPEELQFIRYLKAAKVPVKELEFNEKRLSNVQSALEKC 477
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 64.1 bits (149), Expect = 1e-10
Identities = 37/82 (45%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = -2
Query: 767 VLYQFKEGRXSILVATDVAARGLDVD-GIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTS 591
V QF E R S+L TDV ARGLD D + +V+ D P YIHR+GRT R ++G S
Sbjct: 360 VYSQFIE-RQSVLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKS 418
Query: 590 YAFFTPSNSRQAKDLVSVLQEA 525
F TPS + ++ LQEA
Sbjct: 419 LLFLTPSEEK----MIEKLQEA 436
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 63.7 bits (148), Expect = 1e-10
Identities = 26/71 (36%), Positives = 45/71 (63%)
Frame = -2
Query: 758 QFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFF 579
+F+ + +L+ TD+AARG+D+ + VIN+D+P + ++HR+GR R+ G +Y+F
Sbjct: 316 RFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFV 375
Query: 578 TPSNSRQAKDL 546
TP + DL
Sbjct: 376 TPEDMPYMLDL 386
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 63.3 bits (147), Expect = 2e-10
Identities = 29/71 (40%), Positives = 44/71 (61%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R+ L F+ G+ + LVAT+VAARGLD++ ++ +I + P E YIHR GRTGR+ + G
Sbjct: 385 REVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTG 444
Query: 596 TSYAFFTPSNS 564
+ + S
Sbjct: 445 VAVTLYDSRKS 455
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 63.3 bits (147), Expect = 2e-10
Identities = 39/86 (45%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Frame = -2
Query: 776 RDEVLYQFK--EGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKS 603
R E L +FK EG LV TD+AARGLD+D + +V+ FD+P +S DY+HR GRT R +
Sbjct: 409 RVENLKKFKDEEGDCPTLVCTDLAARGLDLD-VDHVVMFDFPKNSIDYLHRTGRTARMGA 467
Query: 602 KGTSYAFFTPSNSRQAKDLVSVLQEA 525
KG T SR+ + L + ++EA
Sbjct: 468 KGK----VTSLVSRKDQMLAARIEEA 489
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 63.3 bits (147), Expect = 2e-10
Identities = 25/65 (38%), Positives = 43/65 (66%)
Frame = -2
Query: 758 QFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFF 579
+F+ IL+ATD+ ARG+D+ ++ +I++ P+S+E Y+HR GRT R+ + G S A
Sbjct: 547 RFRASENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVHRCGRTARAFADGCSIALI 606
Query: 578 TPSNS 564
P+ +
Sbjct: 607 EPNET 611
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/68 (42%), Positives = 38/68 (55%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
RD+ L F + L+ TDVAARGLD+ GI YV+ +D P + HR GRT R +G
Sbjct: 317 RDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRAGRTARLGRQG 376
Query: 596 TSYAFFTP 573
+ F P
Sbjct: 377 RAIVFLLP 384
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 61.3 bits (142), Expect = 7e-10
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK-SK 600
R QF + IL+ T+VAARGLD + +++ +D P++ DYIHR+GRT R + +K
Sbjct: 439 RTPTFLQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAK 498
Query: 599 GTSYAFFTP 573
G + TP
Sbjct: 499 GKALLVLTP 507
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 60.9 bits (141), Expect = 9e-10
Identities = 28/78 (35%), Positives = 44/78 (56%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R + L F++G +LVA+D RG+DV G+ VIN+D P ++ +IHR GRT R+ G
Sbjct: 367 RSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARAGQAG 426
Query: 596 TSYAFFTPSNSRQAKDLV 543
+ + R+ L+
Sbjct: 427 RCFTLLSNHEVRRFSKLL 444
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 60.1 bits (139), Expect = 2e-09
Identities = 28/61 (45%), Positives = 36/61 (59%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R VL +FK G +LV +++ARGLDV V+N + P + Y HR GRTGR KG
Sbjct: 446 RSTVLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKG 505
Query: 596 T 594
T
Sbjct: 506 T 506
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 59.3 bits (137), Expect = 3e-09
Identities = 26/68 (38%), Positives = 38/68 (55%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R V +F++ + ILV +DV+ARG+D + V+ P+ E YIHR+GRTGR +G
Sbjct: 377 RTRVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEG 436
Query: 596 TSYAFFTP 573
P
Sbjct: 437 EGVLLLAP 444
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 59.3 bits (137), Expect = 3e-09
Identities = 26/68 (38%), Positives = 38/68 (55%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R V +F++ + ILV +DV+ARG+D + V+ P+ E YIHR+GRTGR +G
Sbjct: 679 RTRVSDEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEG 738
Query: 596 TSYAFFTP 573
P
Sbjct: 739 EGVLLLAP 746
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 58.0 bits (134), Expect = 6e-09
Identities = 26/68 (38%), Positives = 37/68 (54%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R V +F++ + ILV +DV+ARG+D + V+ P E YIHR+GRTGR +G
Sbjct: 351 RTRVSNEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEG 410
Query: 596 TSYAFFTP 573
P
Sbjct: 411 EGILLLAP 418
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 58.0 bits (134), Expect = 6e-09
Identities = 28/68 (41%), Positives = 36/68 (52%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R V +FKE ILV +DV+ARG++ + VI P+ E YIHR+GRTGR G
Sbjct: 626 RTRVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGG 685
Query: 596 TSYAFFTP 573
P
Sbjct: 686 EGLLLIAP 693
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 57.6 bits (133), Expect = 9e-09
Identities = 23/51 (45%), Positives = 35/51 (68%)
Frame = -2
Query: 764 LYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 612
L + ++G +LV+TD+AARG+D+ ++ NFD P + DY+HR GR GR
Sbjct: 384 LTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGR 434
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 57.6 bits (133), Expect = 9e-09
Identities = 23/51 (45%), Positives = 35/51 (68%)
Frame = -2
Query: 764 LYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 612
L + ++G +LV+TD+AARG+D+ ++ NFD P + DY+HR GR GR
Sbjct: 227 LTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGR 277
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 57.6 bits (133), Expect = 9e-09
Identities = 27/58 (46%), Positives = 35/58 (60%)
Frame = -2
Query: 707 RGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVL 534
RG+D + VINFD P S YIHRIGRTGR+ S G+S + +P +D+ S L
Sbjct: 398 RGIDFKKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDEMEGFEDIKSFL 455
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/62 (41%), Positives = 34/62 (54%)
Frame = -2
Query: 758 QFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFF 579
+FKE ILV +DV+ARG++ + VI P+ E YIHR+GRTGR G
Sbjct: 679 EFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGKGLLLI 738
Query: 578 TP 573
P
Sbjct: 739 AP 740
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSED-------YIHRIGRT 618
RD+++ +FKE +L+ATDV ARG D + V+N++ P E Y+HR+GR
Sbjct: 379 RDKIVKEFKECLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRA 438
Query: 617 GRSKSKGTSY 588
GR KG +
Sbjct: 439 GRFGRKGAVF 448
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 54.8 bits (126), Expect = 6e-08
Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = -2
Query: 731 LVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR-SKSKGTSYAF 582
LV TD A+RG+D G+ +V+ FD+P +Y+ R+GRT R ++ KG ++ F
Sbjct: 698 LVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARGARGKGKAFIF 748
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
to CAF protein [Arabidopsis thaliana] GI:6102610;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF03368:
Domain of unknown function, PF00636: RNase3 domain,
PF00035: Double-stranded RNA binding motif
Length = 1676
Score = 44.4 bits (100), Expect = 9e-05
Identities = 23/77 (29%), Positives = 39/77 (50%)
Frame = -2
Query: 773 DEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGT 594
+ +L +F+ ++LVAT V GLD+ VI +D P + +I GR++ +
Sbjct: 561 ETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQ---SRGRARMPQS 617
Query: 593 SYAFFTPSNSRQAKDLV 543
YAF S + + DL+
Sbjct: 618 EYAFLVDSGNEKEMDLI 634
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = -2
Query: 767 VLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKS 603
VL +F+ G +++VAT + GLD+ + VI FD S I R+GRTGR +
Sbjct: 519 VLEKFRAGGFNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKNN 573
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R + F + ++VAT GLD + VI+F P S E+Y+ IGR GR
Sbjct: 525 RVRIQESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLS 584
Query: 596 TSYAFF 579
+ F+
Sbjct: 585 YCHLFY 590
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 41.9 bits (94), Expect = 5e-04
Identities = 20/32 (62%), Positives = 23/32 (71%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIK 681
RD VL +FK GR I+ ATDVAARGL GI+
Sbjct: 449 RDRVLAEFKSGRSPIMTATDVAARGLVSSGIR 480
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYV 675
RD L F E +L+ TDVAARGLD+ GI Y+
Sbjct: 281 RDTALASFTEASSGVLLCTDVAARGLDIPGIVYI 314
>At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 620
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/78 (25%), Positives = 37/78 (47%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R VL + + I+VAT G+D ++ V +F+ P S E + GR GR +
Sbjct: 202 RSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPS 261
Query: 596 TSYAFFTPSNSRQAKDLV 543
S ++ + ++ + L+
Sbjct: 262 RSVLYYGVDDRKKMEYLL 279
>At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 713
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/78 (25%), Positives = 37/78 (47%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R VL + + I+VAT G+D ++ V +F+ P S E + GR GR +
Sbjct: 295 RSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPS 354
Query: 596 TSYAFFTPSNSRQAKDLV 543
S ++ + ++ + L+
Sbjct: 355 RSVLYYGVDDRKKMEYLL 372
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = -2
Query: 770 EVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTS 591
+ + +F++G ++LVAT VA GLD+ V+ FD + YI GR++ G+
Sbjct: 714 DTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQ---SRGRARKPGSD 770
Query: 590 Y 588
Y
Sbjct: 771 Y 771
>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
factory-related similar to RNA helicase GB:AAF03534
Length = 1317
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKS 603
++E++ F+ G +I+VAT + GLDV VI FD ++ +I GR S
Sbjct: 435 QNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICSFIQSRGRARMQNS 492
>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
to WRN (Werner syndrome) protein - Mus musculus,
EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00627: UBA/TS-N domain
Length = 858
Score = 34.7 bits (76), Expect = 0.069
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -2
Query: 770 EVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 612
+V F + + ++VAT G+D ++ +I++ + S E Y GR GR
Sbjct: 538 QVHQDFHDNKLQVVVATIAFGMGIDKKNVRKIIHYGWLQSLEAYYQEAGRAGR 590
>At1g12700.1 68414.m01473 helicase domain-containing protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles PF01535: PPR repeat, PF00271:
Helicase conserved C-terminal domain
Length = 828
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R VL +FK +LV ++ GL+ +++ + P + Y HR GR R K
Sbjct: 654 RSSVLKKFKNRDVRVLVTNELLTWGLEDAECDLMVDLELPTDAVHYAHRAGRMRRPGRKM 713
Query: 596 T 594
T
Sbjct: 714 T 714
>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
GI:6102610; contains Pfam profiles PF02170: PAZ domain,
PF00636: RNase3 domain
Length = 1531
Score = 33.1 bits (72), Expect = 0.21
Identities = 21/88 (23%), Positives = 37/88 (42%)
Frame = -2
Query: 755 FKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 576
F+ G+ ++L TDV G V ++ FD P + Y +S SK S F
Sbjct: 417 FQHGKVNLLFITDVVEEGFQVPDCSCMVCFDLPKTMCSYSQSQKHAKQSNSK--SIMFLE 474
Query: 575 PSNSRQAKDLVSVLQEANQMISPQLQSM 492
N +Q L +++ + P+ ++
Sbjct: 475 RGNPKQRDHLHDLMRREVLIQDPEAPNL 502
>At2g35340.1 68415.m04333 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1110
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = -2
Query: 749 EGRXSILVATDVAARGLDVDGIKYVIN 669
EG +++AT++A L +DGIKYV++
Sbjct: 735 EGARKVVLATNIAETSLTIDGIKYVVD 761
>At1g32490.1 68414.m04009 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1044
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = -2
Query: 749 EGRXSILVATDVAARGLDVDGIKYVIN 669
EG +++AT++A L +DGIKYV++
Sbjct: 669 EGARKVVLATNIAETSLTIDGIKYVVD 695
>At4g16680.1 68417.m02519 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 883
Score = 31.9 bits (69), Expect = 0.49
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -2
Query: 749 EGRXSILVATDVAARGLDVDGIKYVINFDY 660
+G +++AT++A L +DG+KYVI+ Y
Sbjct: 487 KGTRKVVLATNIAETSLTIDGVKYVIDPGY 516
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 752 KEGRXSILVATDVAARGLDVDGIKYVINFDY 660
++G +VAT++A L VDGI YVI+ Y
Sbjct: 797 EDGARKCIVATNIAETSLTVDGIYYVIDTGY 827
>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to RNA-dependent ATPase/helicase Cdc28p
[Schizosaccharomyces pombe] GI:1439562; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, weak hit
to PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1775
Score = 31.5 bits (68), Expect = 0.64
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -2
Query: 764 LYQFKEGRXSILVATDVAARGLDVDGIKYVIN 669
++Q GR ++ AT++A L + G+KYVI+
Sbjct: 566 VFQNHPGRRKVIFATNIAETSLTIPGVKYVID 597
>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1787
Score = 31.5 bits (68), Expect = 0.64
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -2
Query: 767 VLYQFKEGRXSILVATDVAARGLDVDGIKYVIN 669
+++Q GR ++ AT++A L + G+KYVI+
Sbjct: 562 MVFQNYPGRRKVIFATNIAETSLTIPGVKYVID 594
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 31.1 bits (67), Expect = 0.85
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -2
Query: 776 RDEVLYQFKEGRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 612
R +V +++ G I+ AT G+D +++VI+ + E Y GR GR
Sbjct: 467 RVDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIHNTLSKAVESYYQESGRAGR 521
>At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00575: S1 RNA binding domain
Length = 1168
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -2
Query: 746 GRXSILVATDVAARGLDVDGIKYVIN 669
G+ ++VAT++A L +DGI YV++
Sbjct: 781 GKRKVVVATNIAEASLTIDGIYYVVD 806
>At1g67370.1 68414.m07669 meiotic asynaptic mutant 1 (ASY1)
identical to meiotic asynaptic mutant 1 [Arabidopsis
thaliana] GI:7939627; contains Pfam profiles PF02301:
DNA-binding HORMA domain, PF04433: SWIRM domain
Length = 596
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -2
Query: 683 KYVINFDYPNS-SEDYIHRIGRTGRSKSKG--TSYAFFTPSNSRQA 555
+Y +F Y +S S+D + I RTG K+ G S A TP+ R +
Sbjct: 104 EYSFSFSYSDSDSQDVMMNINRTGNKKNGGIFNSTADITPNQMRSS 149
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = -2
Query: 746 GRXSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK--SKGTSYAFFTP 573
G+ + AT+ G+DV I ++ +P S + GR+GR + S AF P
Sbjct: 628 GKLCGIAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRQKPSLAVYVAFLGP 687
>At4g02000.1 68417.m00269 expressed protein low similarity to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 314
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +2
Query: 437 LRRICSCSTRRHHHRNGRP 493
LRRICS R HHRN P
Sbjct: 121 LRRICSSCFRMTHHRNSCP 139
>At1g33390.1 68414.m04133 helicase domain-containing protein similar
to kurz protein [Drosophila melanogaster] GI:5869803;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1237
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -2
Query: 752 KEGRXSILVATDVAARGLDVDGIKYVIN 669
KE R ++VAT+VA L + GIKYV++
Sbjct: 670 KEERL-VVVATNVAETSLTIPGIKYVVD 696
>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
to CREB-binding protein GB:AAC51770 GI:2443859 from [Homo
sapiens]; contains Pfam PF02135: TAZ zinc finger profile;
contains Pfam PF00569: Zinc finger, ZZ type domain;
identical to histone acetyltransferase HAC4 (GI:14794966)
{Arabidopsis thaliana}
Length = 1456
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 326 TKILFNSRQIVCNHCPPFGYSCQNCFRV*KSR 421
T ++ + + VCNHC F C C+ V ++R
Sbjct: 1170 TTLMVSGNRWVCNHCKNF-QICDKCYEVEQNR 1200
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,959,658
Number of Sequences: 28952
Number of extensions: 287304
Number of successful extensions: 703
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -