Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G23
         (707 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    30   0.016
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.3  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.3  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    22   4.3  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    22   4.3  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 30.3 bits (65), Expect = 0.016
 Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 7/147 (4%)
 Frame = -2

Query: 637  STRPSRPAASARCP*SWSGATWRSPSARSPPCRARS--PTTSSLHTSSYGVKLETHVTSR 464
            +T+PS   +S      W+  T R  +   P   + +  PTT++  T    +     V   
Sbjct: 1036 TTKPSTWWSSTTTSPWWTTTTTRRTTTTRPTTTSTTTRPTTTNWPTQGTTIPPPAVVMPE 1095

Query: 463  SRRPGT-CS--QYCASRPHSQGSDYQTSLK--RRTYLRQFVSWRCQSNPCNTWKKTFRGV 299
              +P   C   QY    PH+  + Y+  L   R+ Y    + W  +   C+ W K+ +  
Sbjct: 1096 VDKPSQPCEPGQYVPD-PHNCNAYYRCVLGELRKQYCAGGLHWNKERKICD-WPKSAKCE 1153

Query: 298  *RQRTVYSR*CATWPAPTRPSKWPMSS 218
              ++  +    ++W  PT+PS  P S+
Sbjct: 1154 -EKKPGHKPSTSSWQKPTKPSYRPPST 1179


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 698 QDKPNREKDLELAKHIAYVHQHSTQPPSSVRALSMK 591
           Q +P R     +  H AY H   T PP+S   +S K
Sbjct: 84  QTQPARFYSTPIVPHFAYNHNPLT-PPNSEPLVSPK 118


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = -2

Query: 373 YLRQFVSWRCQSNPCNT 323
           + RQ   W    NPC T
Sbjct: 679 FYRQEAQWTSSDNPCTT 695


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -1

Query: 686 NREKDLELAKHIAYVHQHSTQPPSSVRALSMKLVRRYVALTKRKEPAVP 540
           +RE   E+ K +  V     +PP+  +   +K + R +  + R  P+VP
Sbjct: 317 HREVQEEILKEMEAVLDE--EPPTYAKLQELKFMDRVIKESLRLYPSVP 363


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -1

Query: 686 NREKDLELAKHIAYVHQHSTQPPSSVRALSMKLVRRYVALTKRKEPAVP 540
           +RE   E+ K +  V     +PP+  +   +K + R +  + R  P+VP
Sbjct: 317 HREVQEEILKEMEAVLDE--EPPTYAKLQELKFMDRVIKESLRLYPSVP 363


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,082
Number of Sequences: 336
Number of extensions: 3090
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)