Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_G23
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 110 2e-25
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 32 0.070
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 32 0.092
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 31 0.16
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 29 0.65
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 28 1.1
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr... 28 1.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.0
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 26 4.6
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 26 6.1
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 6.1
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 26 6.1
SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces pom... 26 6.1
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 25 8.0
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa... 25 8.0
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 110 bits (265), Expect = 2e-25
Identities = 63/197 (31%), Positives = 99/197 (50%), Gaps = 11/197 (5%)
Frame = -1
Query: 701 IQDKPNREKDLELAKHIAYVHQHSTQPPSSVRALSMKLVRRYVALTKRKEPAVPRALADY 522
I D P+RE D LA+H+ YVH H+ QP L ++R Y++ ++ P VP+ + DY
Sbjct: 543 ILDTPSRETDEHLAQHVTYVHMHNEQPKMDFEPLDPNMIRHYISSARQYRPVVPKDVCDY 602
Query: 521 IVSSYVELR----REARNARDVTFTSARNXXXXXXXXXXXXXXXLSDVVEKEDVSEAIRL 354
+ +YV+LR R+ N R T+ R S+ VE DV EA+RL
Sbjct: 603 VTGAYVQLRQNQKRDEANERQFAHTTPRTLLAILRMGQALARLRFSNRVEIGDVDEALRL 662
Query: 353 VEMSKQSLQHVEENVQRGITSTDRIFAIVRDL-------AGSNKTVKVADVIERCVDKGF 195
+ +SK SL + T T +I+ I+RD+ G+ +++ + + ER + KGF
Sbjct: 663 MSVSKSSLYDDLDPSSHDTTITSKIYKIIRDMLNSIPDVEGNERSLTLRAIRERVLAKGF 722
Query: 194 KPDQVDACIEEYENLNV 144
D + I+EY +L V
Sbjct: 723 TEDHLINTIQEYTDLGV 739
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 32.3 bits (70), Expect = 0.070
Identities = 21/53 (39%), Positives = 26/53 (49%)
Frame = -3
Query: 333 PATRGRKRSEGYNVNGPYIRDSARPGRLQQDRQSGRCHREVRRQRIQTRSGGR 175
P R R R + Y G Y RD+ RPGR + R + R R R + R GGR
Sbjct: 189 PPARRRYRDD-YRRGGDYRRDAYRPGRDDERRYAPRGEYR-RNNRDEYRRGGR 239
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 31.9 bits (69), Expect = 0.092
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Frame = -3
Query: 360 SSRGDVKAIPATRGRKRSEGYNVNGPYIRDSARPGRLQQDR--QSGRCH-REVRRQRIQT 190
SSR P++R R R + Y+ + PY +R R ++R +S R H + R
Sbjct: 154 SSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSRRRYEERSSRSSRAHDYDYEDLRDDD 213
Query: 189 RSGGRLHRRIRELERVA--SEPGADQDNVHV 103
RS R R R ER + SE D+ V V
Sbjct: 214 RSHERKRSRSRPRERSSKLSEEERDRRTVFV 244
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 31.1 bits (67), Expect = 0.16
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 2/132 (1%)
Frame = -1
Query: 701 IQDKPNREKDLELAKHIAYVHQHSTQPPSSVRALSMKLVRRYVALTKRKEPAVPRALADY 522
+ D+ N D LAKHI +H+ + + S + ++RY+ + +P +
Sbjct: 616 VLDECNESVDRHLAKHIVDIHR--LRDDAMQPEFSTEQLQRYIRYARTFKPKLNTESCAE 673
Query: 521 IVSSYVELRR-EARNARDVTF-TSARNXXXXXXXXXXXXXXXLSDVVEKEDVSEAIRLVE 348
IV Y +LR +A+ A ++ + R D + V+EA L+
Sbjct: 674 IVKKYKQLRMDDAQGAGKNSYRITVRQLESMIRLSEAIARANCVDDITPAFVNEAYSLL- 732
Query: 347 MSKQSLQHVEEN 312
+QS+ HVE +
Sbjct: 733 --RQSIIHVERD 742
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 29.1 bits (62), Expect = 0.65
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Frame = -3
Query: 357 SRGDVKAIPATRGRKRSEGYNVN----GPY--IRDSARPGRLQQDRQSGRCHREVRRQRI 196
+RGD + R R RS ++ + PY R S P R + R HR RR R
Sbjct: 145 ARGDSRERDRDRDRTRSSRFDDDDDDRAPYEESRLSRAPSRASRYDDDDRDHRSRRRSRS 204
Query: 195 QTRSGGRLHRRIRELERVASEPGADQDNVHVMPV 94
+ R RR R A A++++ + V
Sbjct: 205 RRPGRSRSRRRSRRPSPSAEHNSAEENDPELQRV 238
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 260 LAGSNKTVKVADVIERCVDKGFKPDQVDACIEEYENLNV 144
LA T KV DV+E D + +++DA I+ Y N+
Sbjct: 347 LAQMGGTEKVEDVLENVNDTLARSEEIDATIQTYNPQNI 385
>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 422
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -2
Query: 517 SLHTSSYGVKLETHVTSRSRRPGTCSQYCASRPHSQGSDYQTSLKRRTYL 368
S +SS+ V ETH + S+RPG + + P + ++ Q S+ +T L
Sbjct: 78 SSQSSSHPVFEETHWSKHSKRPGKLNVLTPTSPSNVNAEVQ-SISTKTQL 126
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 2.0
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = -2
Query: 586 SGATWRSPSARSPPCRARSPTTSSLHTSSYGVKLETHVTSRSRRPGTCSQYCASRPHSQG 407
S ++ S S+ SP + S TTSS +SS + +S S T S +SRP S
Sbjct: 338 SSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSS 397
Query: 406 S 404
S
Sbjct: 398 S 398
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 156 ELERVASEPGADQDNVHVMPVCFSECPPPRX*VVSS 49
E E + S +QD + +PV SE PP VSS
Sbjct: 561 EPENITSSQYPNQDVIKEIPVTASETSPPHAPAVSS 596
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 433 CASRPHSQGSDYQTSLKRRTYLRQFVS 353
C + SDYQ+ L++RT L++ V+
Sbjct: 1138 CNKEAEKRDSDYQSELQKRTDLKKVVT 1164
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 6.1
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = -2
Query: 640 TSTRPSRPAASARCP*SWSGATWRSPSARSPPCRARSPTTSSLHTSSYGVKLETHVTSRS 461
+S+ S ++S+ S S ++ S S+ S + P TSS +S + +S S
Sbjct: 172 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSS 231
Query: 460 RRPGTCSQYCASRPHS 413
RP + S + + S
Sbjct: 232 SRPSSSSSFITTMSSS 247
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 6.1
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -2
Query: 580 ATWRSPSARSPPCRARSPTTSSLHTSSYGVKLETHVTSRSRRPGTCSQYCAS-RPHSQGS 404
AT S ++ S P + S + SS+HTSS ++ +S SR + S S S GS
Sbjct: 500 ATSYSSASASYPSTSMSASLSSVHTSSATSSSKSSSSSSSRSGSSSSSSSRSGSTSSSGS 559
Query: 403 DY 398
+
Sbjct: 560 SH 561
>SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -1
Query: 539 RALADYIVSSYVELRREARNARDVTFTSA 453
RA+ D+I++ ++ L++E + +TFT A
Sbjct: 91 RAIFDFILTGFIYLKKEHIASNSLTFTFA 119
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 220 MTSATLTVLLEPARSRTIANIRSVDVIPL*TFSSTCCRD--CFDISTRR 360
+TS+ + EP T N V + +SSTC R+ C+ IS R
Sbjct: 347 ITSSLSAITKEPEAPETEYNPHGVFTLLTECYSSTCSRNRLCYSISCPR 395
>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 8.0
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 179 DACIEEYENLNVWQ 138
D C+ +Y N NVWQ
Sbjct: 131 DECLRKYGNANVWQ 144
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,137
Number of Sequences: 5004
Number of extensions: 53001
Number of successful extensions: 211
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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