Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_G23
(707 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016427-3|AAB65356.1| 730|Caenorhabditis elegans Yeast mcm (li... 126 2e-29
Z81039-5|CAB02770.1| 812|Caenorhabditis elegans Hypothetical pr... 32 0.35
Z79754-7|CAB02096.2| 387|Caenorhabditis elegans Hypothetical pr... 31 0.81
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 30 1.4
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 30 1.4
Z81502-5|CAB04108.2| 672|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z46241-3|CAA86317.1| 556|Caenorhabditis elegans Hypothetical pr... 29 3.3
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr... 29 4.3
AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related n... 29 4.3
AF537093-1|AAO85552.1| 387|Caenorhabditis elegans ubiquitin con... 29 4.3
AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical ... 28 5.7
AF016654-1|AAB66028.1| 731|Caenorhabditis elegans Hypothetical ... 28 7.5
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr... 27 9.9
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ... 27 9.9
>AF016427-3|AAB65356.1| 730|Caenorhabditis elegans Yeast mcm
(licensing factor) relatedprotein 7 protein.
Length = 730
Score = 126 bits (304), Expect = 2e-29
Identities = 65/183 (35%), Positives = 104/183 (56%), Gaps = 2/183 (1%)
Frame = -1
Query: 701 IQDKPNREKDLELAKHIAYVHQHSTQPPSSVRAL-SMKLVRRYVALTKRKEPAVPRALAD 525
+QDK +RE D LA+HI YVHQH P + L S++ +R Y++L K P V AL +
Sbjct: 530 MQDKADRENDKILAEHITYVHQHGCHPNREKKDLISLETLREYISLCKTYTPTVDPALRE 589
Query: 524 YIVSSYVELRREARNARDVTFTSARNXXXXXXXXXXXXXXXLSDVVEKEDVSEAIRLVEM 345
IV +YVE+RR+AR + D TF S R LS +V++ DV EA+RL++
Sbjct: 590 RIVEAYVEMRRDARYSSDPTFVSPRMILGIVRMATARAKLRLSTIVDESDVEEALRLMQF 649
Query: 344 SKQSLQHVEENVQRGITSTDRIFAIVRDL-AGSNKTVKVADVIERCVDKGFKPDQVDACI 168
+K SL+ + +++ + D FA++R+L N + +++ I+RC KG + C+
Sbjct: 650 AKDSLRPEQNKIEKRMAPVDAAFAVLRELYHADNAPIAISNAIQRCARKGISEVALKKCL 709
Query: 167 EEY 159
++Y
Sbjct: 710 DQY 712
>Z81039-5|CAB02770.1| 812|Caenorhabditis elegans Hypothetical
protein C25D7.6 protein.
Length = 812
Score = 32.3 bits (70), Expect = 0.35
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 5/116 (4%)
Frame = -1
Query: 674 DLELAKHIAYVHQHSTQPPS--SVRALSMKLVRRYVALTKRKEPAVPRALADYIVSSYVE 501
++E K + +++ +TQ + L+M +R+Y+ L + +P + +YI Y +
Sbjct: 534 NMETKKASSSIYEENTQWAGIQDTKILTMDFMRKYIHLARSVQPKLTDEATEYISEVYAD 593
Query: 500 LRREARNARDVTFT---SARNXXXXXXXXXXXXXXXLSDVVEKEDVSEAIRLVEMS 342
+R D T +AR S VE+ED +A L+ +
Sbjct: 594 IRSFDITKTDQERTMPVTARQLETLIRLSTAIAKARFSKKVEREDTEKAYNLLHFA 649
>Z79754-7|CAB02096.2| 387|Caenorhabditis elegans Hypothetical
protein F25H2.8 protein.
Length = 387
Score = 31.1 bits (67), Expect = 0.81
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = -1
Query: 389 VEKEDVSEAIRLVEMSKQSLQHVEENVQRGITSTDRIFAIVRDL 258
V KE + ++ ++++Q QH++ VQ IT+TDR+ +RD+
Sbjct: 185 VSKEGLDMLDKVSKINRQ--QHLDGKVQGSITATDRLMKEIRDI 226
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -2
Query: 553 SPPCRARSPTTSSLHTSS--YGVKLETHVTSRSRRPGTCSQYCASRP 419
SP SPT+ S SS Y T+ S S +PGT +QY + P
Sbjct: 1779 SPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSP 1825
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -2
Query: 553 SPPCRARSPTTSSLHTSS--YGVKLETHVTSRSRRPGTCSQYCASRP 419
SP SPT+ S SS Y T+ S S +PGT +QY + P
Sbjct: 1786 SPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSP 1832
>Z81502-5|CAB04108.2| 672|Caenorhabditis elegans Hypothetical
protein F14B6.5 protein.
Length = 672
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/79 (25%), Positives = 35/79 (44%)
Frame = -1
Query: 395 DVVEKEDVSEAIRLVEMSKQSLQHVEENVQRGITSTDRIFAIVRDLAGSNKTVKVADVIE 216
D V + D + + K+ + +E + + G ++ I +LA + VAD
Sbjct: 558 DAVPRHDTYKTKLIARWLKEGVIPLEIDKRLGQSNAQLIDGSSYELARRRYSQLVADCDG 617
Query: 215 RCVDKGFKPDQVDACIEEY 159
RCV +KPD ++ E Y
Sbjct: 618 RCVLLDYKPDFYNSITESY 636
>Z46241-3|CAA86317.1| 556|Caenorhabditis elegans Hypothetical
protein C38D4.4 protein.
Length = 556
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = -2
Query: 637 STRPS--RPAASARCP*SWSGATWRSPSARSPPCRARSPTTSSLHTSSYGVKLETHVTSR 464
S +PS PA+SAR + AT + R PP R P+T++ H+S +H T+R
Sbjct: 130 SPKPSFMYPASSARANPAKPQATGYRNTVRHPPVR---PSTATGHSSFANRSAYSHHTTR 186
Query: 463 SRRPG 449
S G
Sbjct: 187 STTVG 191
>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical protein
H03E18.1 protein.
Length = 1147
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -1
Query: 395 DVVEKEDVSEAIRLVEMSKQSLQHVEENVQRGITST 288
D EKED+++ RLVEM K Q +E+ + IT +
Sbjct: 895 DSQEKEDINKDPRLVEMKKVEAQVLEKLAKMEITES 930
>Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical
protein C01C7.1 protein.
Length = 1043
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -2
Query: 607 ARCP*SWSGATWRSPSARSPPCRARSPTTSSLH 509
A CP S S +T R A P S TTSS+H
Sbjct: 513 AMCPTSSSPSTSRGSQASPAPSHTSSSTTSSVH 545
>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
protein F07A11.4 protein.
Length = 1095
Score = 28.7 bits (61), Expect = 4.3
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 1/128 (0%)
Frame = -2
Query: 568 SPSARSPPCRARSPTTSSLHTSSYGVKLETHVTSRSRRPGTC-SQYCASRPHSQGSDYQT 392
SPS+ +P TTS+ T+S KL + RSR T S + P + + ++T
Sbjct: 39 SPSSYTPNISRNLNTTSTGSTTSDTPKLSSSSAPRSRLSFTTPSSTSTNLPRTSITSHKT 98
Query: 391 SLKRRTYLRQFVSWRCQSNPCNTWKKTFRGV*RQRTVYSR*CATWPAPTRPSKWPMSSRG 212
R VS S +T T+RG+ + T+ + A T+P +S
Sbjct: 99 LYSSPAAARVSVSTN-DSLSHSTPHNTYRGISKYSTIE----RSTVADTKPYYSSATSSL 153
Query: 211 ASTKDSNQ 188
+ST DS +
Sbjct: 154 SSTYDSRR 161
>AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related
non-receptor tyrosinekinase protein.
Length = 1043
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -2
Query: 607 ARCP*SWSGATWRSPSARSPPCRARSPTTSSLH 509
A CP S S +T R A P S TTSS+H
Sbjct: 513 AMCPTSSSPSTSRGSQASPAPSHTSSSTTSSVH 545
>AF537093-1|AAO85552.1| 387|Caenorhabditis elegans ubiquitin
conjugating enzyme UBC-25 protein.
Length = 387
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = -1
Query: 389 VEKEDVSEAIRLVEMSKQSLQHVEENVQRGITSTDRIFAIVRDL 258
V KE + + ++++Q QH++ VQ IT++DR+ +RD+
Sbjct: 185 VSKEGLDMLDKASKINRQ--QHLDGKVQGSITASDRLMKEIRDI 226
>AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical
protein Y41D4B.18 protein.
Length = 338
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = -2
Query: 619 PAASARCP*SWSGATWRSPSARSPPCRARSPTTSSLHTSSYGVKLET 479
P S++ P S S ++ SP+ +PP +R PTT+S T+S V+ T
Sbjct: 271 PKTSSQ-PVSSSTSSTSSPAPTNPPTTSR-PTTASQSTASQNVETTT 315
>AF016654-1|AAB66028.1| 731|Caenorhabditis elegans Hypothetical
protein C17A2.5 protein.
Length = 731
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = -1
Query: 395 DVVEKEDVSEAIRLVEMSKQSLQHVEENVQRGITSTDRIFAIVRDLAGSNKTVKVADVIE 216
D V + D + + + +K+ VE N + G T+ + +LA + V D
Sbjct: 617 DAVPRHDTYKTQFIADWAKEGADLVEINKRLGQTNAQLLDGPAYELARRRNSELVKDCGG 676
Query: 215 RCVDKGFKP 189
RCV +KP
Sbjct: 677 RCVLVDYKP 685
>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/70 (22%), Positives = 28/70 (40%)
Frame = -3
Query: 279 IRDSARPGRLQQDRQSGRCHREVRRQRIQTRSGGRLHRRIRELERVASEPGADQDNVHVM 100
+RD+ GR Q G + +++ S + +RE + EP D +
Sbjct: 757 VRDAPEAGRRQLREILG-----LSPDKVKPNSDDKTKTSVRERKETDGEPSEDNNTQKAA 811
Query: 99 PVCFSECPPP 70
P+ + PPP
Sbjct: 812 PIASNPPPPP 821
>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
F47A4.2 protein.
Length = 3498
Score = 27.5 bits (58), Expect = 9.9
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Frame = -3
Query: 333 PATRGR----KRSEGYNVNGPYI-RDSARPGRLQQDRQSGRCHREVRRQRIQTRSGGRLH 169
PATRGR KR+ G GP R ++R Q + + + + +GG H
Sbjct: 2314 PATRGRGGGRKRNSGARGGGPRAKRANSRADTAQAAAATTQWNAPIANTS-NPAAGGNFH 2372
Query: 168 RRIRELERVASEPGADQDNVHV 103
+R + S +D+ VH+
Sbjct: 2373 AAMRGNQPPMSNGSSDETKVHI 2394
>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/70 (22%), Positives = 28/70 (40%)
Frame = -3
Query: 279 IRDSARPGRLQQDRQSGRCHREVRRQRIQTRSGGRLHRRIRELERVASEPGADQDNVHVM 100
+RD+ GR Q G + +++ S + +RE + EP D +
Sbjct: 757 VRDAPEAGRRQLREILG-----LSPDKVKPNSDDKTKTSVRERKETDGEPSEDNNTQKAA 811
Query: 99 PVCFSECPPP 70
P+ + PPP
Sbjct: 812 PIASNPPPPP 821
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,428,129
Number of Sequences: 27780
Number of extensions: 314503
Number of successful extensions: 1202
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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