Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_G23
(707 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g02060.1 68417.m00276 prolifera protein (PRL) / DNA replicati... 120 9e-28
At2g16440.1 68415.m01883 DNA replication licensing factor, putat... 53 2e-07
At5g44635.1 68418.m05469 minichromosome maintenance family prote... 38 0.009
At4g11680.1 68417.m01866 zinc finger (C3HC4-type RING finger) fa... 30 1.3
At3g06830.1 68416.m00810 pectinesterase family protein contains ... 30 1.7
At2g15630.1 68415.m01790 pentatricopeptide (PPR) repeat-containi... 29 2.3
At1g66345.1 68414.m07535 pentatricopeptide (PPR) repeat-containi... 29 3.0
At4g20240.1 68417.m02957 cytochrome P450, putative similar to |C... 29 4.0
At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -relat... 29 4.0
At1g80610.1 68414.m09459 expressed protein 29 4.0
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 28 5.3
At5g51410.2 68418.m06374 LUC7 N_terminus domain-containing prote... 28 7.0
At5g51410.1 68418.m06373 LUC7 N_terminus domain-containing prote... 28 7.0
At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911... 28 7.0
At2g33700.1 68415.m04130 protein phosphatase 2C, putative / PP2C... 27 9.2
At1g29730.1 68414.m03634 leucine-rich repeat transmembrane prote... 27 9.2
At1g03560.1 68414.m00337 pentatricopeptide (PPR) repeat-containi... 27 9.2
>At4g02060.1 68417.m00276 prolifera protein (PRL) / DNA replication
licensing factor Mcm7 (MCM7) identical to DNA replication
licensing factor Mcm7 SP|P43299 PROLIFERA protein
{Arabidopsis thaliana}; contains Pfam profile PF00493:
MCM2/3/5 family
Length = 716
Score = 120 bits (289), Expect = 9e-28
Identities = 67/204 (32%), Positives = 109/204 (53%), Gaps = 3/204 (1%)
Frame = -1
Query: 707 WXIQDKPNREKDLELAKHIAYVHQHSTQPPSSVRALSMKLVRRYVALTKRKEPAVPRALA 528
W I D+ + + DLELAKH+ +VHQ P L ++R Y++ +R P VP L
Sbjct: 514 WLILDRADMDSDLELAKHVLHVHQTEESPALGFEPLEPNILRAYISAARRLSPYVPAELE 573
Query: 527 DYIVSSYVELRR-EARNARDVTFTSARNXXXXXXXXXXXXXXXLSDVVEKEDVSEAIRLV 351
+YI ++Y +R+ EA++ ++T+ R S+ V + DV EA+RL+
Sbjct: 574 EYIATAYSSIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSESVAQSDVDEALRLM 633
Query: 350 EMSKQSLQHVEENVQRGITSTDRIFAIVRD-LAGSNKT-VKVADVIERCVDKGFKPDQVD 177
+MSK SL + ++ + G+ + ++I+RD A S KT V A+ + KG+ Q+
Sbjct: 634 QMSKISL-YADDRQKAGLDAISDTYSIIRDEAARSKKTHVSYANALNWISRKGYSEAQLK 692
Query: 176 ACIEEYENLNVWQVNQVRTKITFM 105
C+EEY LNVWQ++ I F+
Sbjct: 693 ECLEEYAALNVWQIDPHTFDIRFI 716
>At2g16440.1 68415.m01883 DNA replication licensing factor, putative
similar to SP|P49717 DNA replication licensing factor
MCM4 (CDC21 homolog) {Mus musculus}, SP|P29458 Cdc21
protein {Schizosaccharomyces pombe}; contains Pfam
profile PF00493: MCM2/3/5 family
Length = 847
Score = 52.8 bits (121), Expect = 2e-07
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 6/146 (4%)
Frame = -1
Query: 707 WXIQDKPNREKDLELAKHIAYVHQHSTQPPSSVRALSMKLVRRYVALTKRK-EPAVPRAL 531
+ I DKP+ + D LAKHI +H + + + A+ + + YV+ ++ P +
Sbjct: 623 YLILDKPDEQTDRRLAKHIVALHFENAE-SAQEEAIDITTLTTYVSYARKNIHPKLSDEA 681
Query: 530 ADYIVSSYVELRRE---ARNARDVTFTSARNXXXXXXXXXXXXXXXLSDVVEKEDVSEAI 360
A+ + YVELR+ A +++ V + R S+ VEK DV EA
Sbjct: 682 AEELTRGYVELRKAGKFAGSSKKVITATPRQIESLIRLSEALARMRFSEWVEKHDVDEAF 741
Query: 359 RL--VEMSKQSLQHVEENVQRGITST 288
RL V M + + H + + +T
Sbjct: 742 RLLRVAMQQSATDHATGTIDMDLINT 767
>At5g44635.1 68418.m05469 minichromosome maintenance family protein
/ MCM family protein similar to SP|P97311 DNA
replication licensing factor MCM6 {Mus musculus};
contains Pfam profile PF00493: MCM2/3/5 family
Length = 831
Score = 37.5 bits (83), Expect = 0.009
Identities = 23/68 (33%), Positives = 34/68 (50%)
Frame = -1
Query: 695 DKPNREKDLELAKHIAYVHQHSTQPPSSVRALSMKLVRRYVALTKRKEPAVPRALADYIV 516
D P+ D +A HI VHQ + S +++L +RY+A K +P + +V
Sbjct: 537 DDPDEVTDYHIAHHIVRVHQKH-EAALSPEFTTVQL-KRYIAYAKTLKPKLSPEARKLLV 594
Query: 515 SSYVELRR 492
SYV LRR
Sbjct: 595 ESYVALRR 602
>At4g11680.1 68417.m01866 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|Q9WTV7 RING finger
protein 12 (LIM domain interacting RING finger protein)
{Mus musculus}; contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 390
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Frame = -3
Query: 360 SSRGDVKAIPATRGRKRSEGYNVNGPYIRDSARPGRLQQDRQSGRCHREVRRQRIQTRSG 181
++ D ++P GR S+G P++ + + D +S HR RRQ ++ +
Sbjct: 12 TTESDSSSLPTHIGRSNSDGIIDTTPFLPPTVTR-TISVDEESNPIHRSARRQGLREAAR 70
Query: 180 GRLH----RRIRELERVASEPGADQ 118
H R +RE + E A+Q
Sbjct: 71 FLRHAGSRRMMREPSMLVRETAAEQ 95
>At3g06830.1 68416.m00810 pectinesterase family protein contains
Pfam profiles: PF01095 pectinesterase,PF04043 plant
invertase/pectin methylesterase inhibitor
Length = 568
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -1
Query: 239 VKVADVIERCVDKGFKPDQVDACIEEYENLNVWQVNQVRTKITFM 105
+ D +++C+D GF DQ++ +E+ L VW + + T M
Sbjct: 126 IDAIDDLKKCMDHGFSVDQIEVFVED---LRVWLSGSIAFQQTCM 167
>At2g15630.1 68415.m01790 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 627
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -1
Query: 344 SKQSLQHVEENVQRGITSTDRIF-AIVRDLAGSNKTVKVADVIERCVDKGFKPDQV 180
+K++ +E + GI T + +++ L NKT + ++ E+ V KG KPD V
Sbjct: 413 AKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLV 468
>At1g66345.1 68414.m07535 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 544
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -1
Query: 341 KQSLQHVEENVQRGITSTDRIF-AIVRDLAGSNKTVKVADVIERCVDKGFKPDQ 183
++ L++ E V RG+ + F +V+ ++ + +++ + +DKGF PD+
Sbjct: 391 EKGLEYCEVMVTRGLMPSCSAFNEMVKSVSKIENVNRANEILTKSIDKGFVPDE 444
>At4g20240.1 68417.m02957 cytochrome P450, putative similar to
|C71R_ARATH Cytochrome P450 71A27 (SP:O65438)
[Arabidopsis thaliana]
Length = 865
Score = 28.7 bits (61), Expect = 4.0
Identities = 25/79 (31%), Positives = 38/79 (48%)
Frame = -1
Query: 692 KPNREKDLELAKHIAYVHQHSTQPPSSVRALSMKLVRRYVALTKRKEPAVPRALADYIVS 513
KPN+ I Y+HQ S P S R+LS++L + A + R P PR + YI S
Sbjct: 482 KPNQPPSPWRLPVIGYLHQLSLHPHRSFRSLSLRLWSAH-APSLRSCP-YPR-FSKYISS 538
Query: 512 SYVELRREARNARDVTFTS 456
S ++ + D+ F +
Sbjct: 539 S--DVAHDVMKTHDLKFAN 555
>At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -related
similar to CLIP-associating protein CLASP2 (GI:13508651)
[Rattus norvegicus]
Length = 1439
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 565 PSARSPPCRARSPTTSSLHTSSYGVKLETHVTSRSRRPG 449
PS+R PP A +P ++S HTSS + + S R G
Sbjct: 621 PSSRDPPFHAVAPASNS-HTSSAAAESTHSINKGSNRNG 658
>At1g80610.1 68414.m09459 expressed protein
Length = 211
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/54 (37%), Positives = 23/54 (42%)
Frame = -2
Query: 649 RMCTSTRPSRPAASARCP*SWSGATWRSPSARSPPCRARSPTTSSLHTSSYGVK 488
R S + + AS P SWSGAT S S A + T L SS VK
Sbjct: 45 RQRRSKKGDQTRASPTTPLSWSGATSLSGGGGSGGSGAGATTMEGLEESSAAVK 98
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 28.3 bits (60), Expect = 5.3
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Frame = -3
Query: 324 RGRKRSEGYNVNGPYIRDSARPGRLQQDRQSGRCHREVRRQRIQTRSGGR------LHRR 163
+ R R + + + RD R +DRQ R HR+ R R + RS R HRR
Sbjct: 70 KDRDREKSRDRDREKSRDRDRDRERSKDRQRDRHHRDRHRDRSRERSEKRDDLDDDHHRR 129
Query: 162 IRELER 145
R+ +R
Sbjct: 130 SRDRDR 135
>At5g51410.2 68418.m06374 LUC7 N_terminus domain-containing protein
similar to cisplatin resistance-associated overexpressed
protein [Homo sapiens] GI:6899846; contains Pfam profile
PF03194: LUC7 N_terminus
Length = 334
Score = 27.9 bits (59), Expect = 7.0
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 324 RGRKRSEGYNVNGPYIRDSARPGRLQQDRQSGRCHREVR-RQRIQTRSGGRLHRRI 160
R R R N +G RD R R DR+S R RE R R R ++ G HRR+
Sbjct: 272 RERYRDRDRNRDGDRHRDRGRDYRKPYDRRS-RSGREDRDRSRSRSPHGRSGHRRV 326
>At5g51410.1 68418.m06373 LUC7 N_terminus domain-containing protein
similar to cisplatin resistance-associated overexpressed
protein [Homo sapiens] GI:6899846; contains Pfam profile
PF03194: LUC7 N_terminus
Length = 334
Score = 27.9 bits (59), Expect = 7.0
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 324 RGRKRSEGYNVNGPYIRDSARPGRLQQDRQSGRCHREVR-RQRIQTRSGGRLHRRI 160
R R R N +G RD R R DR+S R RE R R R ++ G HRR+
Sbjct: 272 RERYRDRDRNRDGDRHRDRGRDYRKPYDRRS-RSGREDRDRSRSRSPHGRSGHRRV 326
>At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911:
Plant protein of unknown function (DUF869)
Length = 982
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 251 SNKTVKVADVIERCVDKGFKPDQVDACIEEYENLN 147
S KT V +V+++ + G KP + ++Y NLN
Sbjct: 13 SEKTATVTEVVDQ--ENGKKPSYIQISFDQYTNLN 45
>At2g33700.1 68415.m04130 protein phosphatase 2C, putative / PP2C,
putative contains PF00481: Protein phosphatase 2C
domain; similar to protein phosphatase-2C (PP2C)
(GI:3643085) [Mesembryanthemum crystallinum]
Length = 380
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = -3
Query: 243 DRQSGRCHREVRRQRIQTRSGGRLHRRIRELERVASEPGADQDNVHVMPVCFSECPPPR 67
D S +C + R+ + + R REL R A + DN+ V+ VCFS PP R
Sbjct: 296 DVMSSQCAVTIARKELMIHNDPE--RCSRELVREALKRNTC-DNLTVIVVCFSPDPPQR 351
>At1g29730.1 68414.m03634 leucine-rich repeat transmembrane protein
kinase, putative contains Pfam domains, PF00560: Leucine
Rich Repeat and PF00069: Protein kinase domain
Length = 940
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 156 ELERVASEPGADQDNVHVMPVCFS 85
E+E++ S+PG DN+H P S
Sbjct: 887 EIEQIISDPGVYSDNLHFKPSSLS 910
>At1g03560.1 68414.m00337 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 660
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 320 EENVQRGITSTDRIFAIVRD-LAGSNKTVKVADVIERCVDKGFKPDQV 180
E +++G I+ ++ D A S ++ R +D+GFKPD V
Sbjct: 351 ENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVV 398
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,656,738
Number of Sequences: 28952
Number of extensions: 293547
Number of successful extensions: 1037
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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