Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G20
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   210   2e-55
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   9.5  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  210 bits (512), Expect = 2e-55
 Identities = 108/208 (51%), Positives = 136/208 (65%), Gaps = 1/208 (0%)
 Frame = -2

Query: 801 GHPEVYILILPGXGIISHIISQERGXKETFXXXXXXXXXXXXXXXGFIV*AHHIFTVGID 622
           GHPEVYILI+P  G++SHII      K  F               G +V +HH+FTVG+D
Sbjct: 246 GHPEVYILIMPAFGVVSHIIPS-LAHKPIFGKEGMLWAMLSIALLGLMVWSHHLFTVGLD 304

Query: 621 IDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNP-NIL*RLGFVFLFTVGGLTGVI 445
           +DTRAYF++AT++IA+PTGIKIF  LAT+ G  I ++   +L  +GF+ LFT+GGLTGVI
Sbjct: 305 VDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIGGLTGVI 364

Query: 444 LANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLFTGLSLNSYILKIQFFTI 265
           L+NS +DI  HDTY+VVAHFHYVLS               P   GL  N  +  IQF+ +
Sbjct: 365 LSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYY-WSPKMFGLMYNETLASIQFWIL 423

Query: 264 FIGVNITFFPQHFLGLAGIPRRYSDYPD 181
           FIGVNI F PQHFLGL G+PRR  DYP+
Sbjct: 424 FIGVNIVFGPQHFLGLNGMPRRIPDYPE 451


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 316 YRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIFRL 188
           +RPF KFL  K  IF + YW +  +  T +      T  I+ L
Sbjct: 201 FRPFPKFLSVKAIIFAS-YWQQTVLSITNWLGLLNGTGWIYSL 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,166,413
Number of Sequences: 5004
Number of extensions: 34060
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)