Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G19
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    29   0.53 
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    28   1.2  
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    28   1.6  
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    27   3.7  
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    27   3.7  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    26   6.5  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    25   8.6  

>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = -2

Query: 561 DMYKNFADVNLKDVFKQLQKDVDDFGLEDVDVKLPRF-QISTNVVLNKPLNDMGVYDIFQ 385
           D++      NL++    LQ  V++F +    ++   F QI +  + N   +D  + D+ +
Sbjct: 48  DLFMGLTRQNLEEKVNSLQDSVENFEIIHESLRFTVFYQILSQFMQNICFHDFTIQDLLK 107

Query: 384 PDLANFQRI 358
           PD    Q I
Sbjct: 108 PDRNRLQLI 116


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = -2

Query: 567 IADMYKNFADVNLKDVFKQLQKDVDDFGLEDVDVKLPRF--QISTNVVLNKPLND 409
           +  +Y+N   +  K  F     + D FGLE  +  LP     + ++  L  P ND
Sbjct: 294 LGPVYENSGHLPSKSHFSSTDSNTDSFGLESDERSLPSVSNDLKSSETLKNPRND 348


>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 551

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 552 KNFADVNLKDVFKQLQKDVDDFGLEDVDVKLPRF 451
           ++F D ++KD+F +LQKD+    +E     LP F
Sbjct: 274 QDFIDNDVKDMFPELQKDIHVTLIEAAPGVLPMF 307


>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = +3

Query: 6   LIEITTKNLIHKK-FIAQSFFQXKKLISAFCLRPSGAIKIKKKKHINRQSVLNKYH*--I 176
           +I+   K LI    F+A+S F+  +  +AF  +P     I K + +       ++H   I
Sbjct: 229 IIKSKLKELIGTSIFLAESRFRKLEANNAFHRKP-----IIKNRDVVLSGKFLRFHRFNI 283

Query: 177 SQWWSFSPLRSKQRAYSRGMR 239
             +W + P R K   Y R  R
Sbjct: 284 PGFWKYLPTRQKMNVYKRNKR 304


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 272 VDAEATVPDSVTSISALCTMADTNI 346
           +DA  T PD++  +S  CT+  T I
Sbjct: 50  IDASFTDPDAIVELSKKCTLLTTEI 74


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 429 LNKPLNDMGVYDIFQPDLANFQR 361
           L++   D+ V+  FQP LANF++
Sbjct: 253 LDETETDVEVFSCFQPQLANFKK 275


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 175 YHSGGRFLHYEVNKGPIRVECGRRNPIGK 261
           Y  G  + H E  K P+     RRNP GK
Sbjct: 262 YTVGPHYSHAETRKSPVVDGIVRRNPHGK 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,762,612
Number of Sequences: 5004
Number of extensions: 53997
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)