Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G18
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    30   0.28 
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    27   2.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   4.5  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    26   4.5  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    26   6.0  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    25   7.9  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   7.9  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 382 RHYGSSRSINGVFRYHKHRSP-SSSNPSLATKGST-SELTHRHSPLSFSPD 528
           R+YG +    G   Y+ + +P SSS PS+ ++ +T SE     SP+S   D
Sbjct: 58  RYYGRAAETGGTPTYYGYATPTSSSEPSIFSESATPSETNSYSSPVSSYSD 108


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
 Frame = +1

Query: 295 HGFSGTWIFMMTWNRSCRPNGKQSTSPKTRHYGSSRSINGVFR-YHKHRSPS--SSN--- 456
           + F   W+  M+WN S  P G+++    +  Y    S N  +    K  SP+  S+N   
Sbjct: 370 NSFEQDWLASMSWNLSPGPRGQKAWEWWSASYSLFTSSNATYSGEQKTYSPTTLSTNAPP 429

Query: 457 -PSLATKGSTSELTHRHSPLSFSP 525
            PS     S     + ++P+ + P
Sbjct: 430 SPSSGRSCSNCNYYYPYTPVGYYP 453


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 593  DPSKCSASQNLLPDPKRDPLKRSGEKLS 510
            DPS  S S N  P P++ PL+    K+S
Sbjct: 1325 DPSTTSTSFNTAPIPQQAPLENQFSKMS 1352


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +1

Query: 355 GKQSTSPKTRHYGSSRSINGVFRYHKHRSPSSSNPSLATKGSTSELTHRHS 507
           G   +S  +  + S     G+ +     SPS+S+PS A+  S S+   + +
Sbjct: 35  GSSPSSSSSHDFESKEDAEGMNKDESAPSPSTSSPSSASSRSQSKYVRKEA 85


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +1

Query: 340 SCRPNGKQSTSPKTRHYGSSRSINGVFRYHKHRSPSSSNPSLATKGSTSELTHRHS 507
           S  PN K S+   ++   SS     +    KH SP   N S+++  + S L   HS
Sbjct: 293 SDNPNLKYSSKTLSKRDTSSHYPETLKASSKHSSPVKGNSSISSTWTPSNLKIYHS 348


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 299 PWCSDGYPAKSGLNNLKGF 243
           P+C   YPA S LN+  G+
Sbjct: 356 PYCHTSYPAMSRLNSSSGY 374


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 22/85 (25%), Positives = 35/85 (41%)
 Frame = -3

Query: 517 NSVGCVYGLIRSSSPSLQATGSTRTVTGACDT*KHR*WIGRIRNDVFWATSTVYHSVYRI 338
           N+V C++ + R +   +   G  RTV  +  T +H    G +  D   A   +   V  +
Sbjct: 591 NTVACIFSVDRDTYKVIDQNGGVRTVLASQITMRHSNRRG-VATDRNGAEIRIGDKVKEV 649

Query: 337 GSRSS*RSTFLRNHGAPTAILQNRD 263
           G     + T L  + A    L NRD
Sbjct: 650 GGEGK-QGTILHIYRA-FVFLHNRD 672


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,393
Number of Sequences: 5004
Number of extensions: 54565
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)