Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G18
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    34   0.11 
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    34   0.11 
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    34   0.11 
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    32   0.46 
AL033514-8|CAA22097.2|  715|Caenorhabditis elegans Hypothetical ...    29   2.4  
AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical ...    28   5.6  
AC024791-2|AAK95891.1|  604|Caenorhabditis elegans Temporarily a...    28   7.4  
U10402-1|AAK67218.1|  232|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
           protein 104, isoforma protein.
          Length = 1584

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +1

Query: 307 GTWIFMMTWNRSCRPNGKQSTSPKTRHYGSSRSING---VFRYHKHRSPSSSNPSLA 468
           G     M  N SC  NGKQ T+P   H G SR I G   VFRY+  +    S  +LA
Sbjct: 521 GNVTLTMKPNASCYINGKQVTTPTVLHTG-SRVILGEHHVFRYNDPQEARQSRHNLA 576


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
           protein 104, isoformb protein.
          Length = 1628

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +1

Query: 307 GTWIFMMTWNRSCRPNGKQSTSPKTRHYGSSRSING---VFRYHKHRSPSSSNPSLA 468
           G     M  N SC  NGKQ T+P   H G SR I G   VFRY+  +    S  +LA
Sbjct: 521 GNVTLTMKPNASCYINGKQVTTPTVLHTG-SRVILGEHHVFRYNDPQEARQSRHNLA 576


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
           protein protein.
          Length = 1584

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +1

Query: 307 GTWIFMMTWNRSCRPNGKQSTSPKTRHYGSSRSING---VFRYHKHRSPSSSNPSLA 468
           G     M  N SC  NGKQ T+P   H G SR I G   VFRY+  +    S  +LA
Sbjct: 521 GNVTLTMKPNASCYINGKQVTTPTVLHTG-SRVILGEHHVFRYNDPQEARQSRHNLA 576


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 20/49 (40%), Positives = 25/49 (51%)
 Frame = +1

Query: 340  SCRPNGKQSTSPKTRHYGSSRSINGVFRYHKHRSPSSSNPSLATKGSTS 486
            S  PN  QSTSP T    SS   +G        SPS S+   +++GSTS
Sbjct: 1091 STSPNPSQSTSPSTSGATSSPGSSGTTLTSISPSPSQSSTIGSSQGSTS 1139


>AL033514-8|CAA22097.2|  715|Caenorhabditis elegans Hypothetical
           protein Y75B8A.8 protein.
          Length = 715

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +1

Query: 316 IFMMTWNRSCRPNGKQSTSPKTRHYGSSRSINGVFRYHKHRSPSSSNPSLATKG 477
           IFM  +N    P  +QS+ P + H  S +       YH     + SNP +A KG
Sbjct: 662 IFMPKYNNESSP--EQSSQPGSAH-SSQQQKTPEMAYHSRLPAAVSNPIIAQKG 712


>AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical
           protein Y40B1A.5 protein.
          Length = 134

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 341 PVDRMVNSRRRPKHVITDPPDP 406
           PV     +RRR +HV++ PP P
Sbjct: 4   PVVEFTTARRRKRHVVSTPPPP 25


>AC024791-2|AAK95891.1|  604|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 63 protein.
          Length = 604

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 349 PNGKQSTSPKTRHYGSSRSINGVFRYHKHRSPSSSNPSLATKGSTSELTHRHS 507
           P  K++T P + +    R+++   +  K  SP+ S+PS+ T   T     R S
Sbjct: 373 PENKENTKPNSPYSLRKRAVDSSKKPGKSDSPAVSSPSITTPVPTRPTRLRKS 425


>U10402-1|AAK67218.1|  232|Caenorhabditis elegans Hypothetical
           protein C34E10.10 protein.
          Length = 232

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 432 APVTVLVEPVACNEGLDERINP*TQPTEFLT 524
           AP  VLV+   CN  L E++N   Q  ++LT
Sbjct: 24  APYRVLVDGTFCNAALQEKLNLAEQIPKYLT 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,947,922
Number of Sequences: 27780
Number of extensions: 317617
Number of successful extensions: 694
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)