Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G18
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   2.1  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.7  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   4.9  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   4.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   4.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.5  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 383 RVLGDVDCLPFGLQDRFQVIMKIHVPEKPWCSDG-YPAKSG 264
           RV  +VD LPFG+++         VP+ P   +G Y + SG
Sbjct: 37  RVAEEVDPLPFGVENTIS-----SVPQPPRSLEGSYDSSSG 72


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +1

Query: 247 PFRLFNPDFAG*PSEHHGFSGTW--IFMMTWNRSC 345
           P +L+ PD     S   GF GT+    ++T N SC
Sbjct: 65  PNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGSC 99


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +1

Query: 247 PFRLFNPDFAG*PSEHHGFSGTW--IFMMTWNRSC 345
           P +L+ PD     S   GF GT+    ++T N SC
Sbjct: 133 PNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSC 167


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +1

Query: 247 PFRLFNPDFAG*PSEHHGFSGTW--IFMMTWNRSC 345
           P +L+ PD     S   GF GT+    ++T N SC
Sbjct: 133 PNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSC 167


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +1

Query: 424 YHKHRSPSSSNPSLATKGSTSEL 492
           YH +R P   N   A  G  S L
Sbjct: 24  YHPYRQPDGMNQCQAVNGHCSHL 46


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +1

Query: 424 YHKHRSPSSSNPSLATKGSTSEL 492
           YH +R P   N   A  G  S L
Sbjct: 24  YHPYRQPDGMNQCQAVNGHCSHL 46


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 247 PFRLFNPDFAG*PSEHHGFSGTW 315
           P RL+ PD     S   GF GT+
Sbjct: 102 PHRLWKPDVLMYNSADEGFDGTY 124


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 134 SISNILSV*SMICTPYAPSRHDVCKRSVRSRG 229
           S+   LSV   I T   P + DVC+R+    G
Sbjct: 130 SVKENLSVHRRIHTKERPYKCDVCERAFEHSG 161


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 226 RPTLT*NPFRLFNPDFAG*PSEHHGFSG 309
           +PTL   P     P+F G   +H G SG
Sbjct: 390 KPTLEDAPQNSLLPNFVGYKGKHIGKSG 417


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,708
Number of Sequences: 438
Number of extensions: 3656
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)