Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G18
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08410.1 68417.m01390 proline-rich extensin-like family prote...    29   2.3  
At4g08400.1 68417.m01388 proline-rich extensin-like family prote...    29   2.3  
At1g16900.1 68414.m02047 curculin-like (mannose-binding) lectin ...    29   2.3  

>At4g08410.1 68417.m01390 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965;
          Length = 707

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +1

Query: 367 TSPKTRHYGSSRSINGVFRYHKHRSPS--SSNPSLATKGSTSELTHRHSPLSF 519
           TSP+T HY S    + + +Y  H  PS  SS+P  +    + ++ ++  P S+
Sbjct: 53  TSPQTPHYNSPSHEHKIPKYTPHPKPSIYSSSPPPSYYSPSPKVDYKSPPPSY 105


>At4g08400.1 68417.m01388 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 513

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +1

Query: 367 TSPKTRHYGSSRSINGVFRYHKHRSPS--SSNPSLATKGSTSELTHRHSPLSF 519
           TSP+T HY S    + + +Y  H  PS  SS+P  +    + ++ ++  P S+
Sbjct: 35  TSPQTPHYNSPSHEHKIPKYTPHPKPSIYSSSPPPSYYSPSPKVDYKSPPPSY 87


>At1g16900.1 68414.m02047 curculin-like (mannose-binding) lectin
           family protein very low similarity to Ser Thr protein
           kinase GI:2598067 from (Zea mays); contains Pfam lectin
           (probable mannose binding) domain PF01453
          Length = 919

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 322 MMTWNRSCRPNGKQSTSPKTRHY 390
           +M W+++C+P   +S  PK+ HY
Sbjct: 303 LMGWSKACKPKKVKSCDPKSFHY 325


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,166,451
Number of Sequences: 28952
Number of extensions: 301057
Number of successful extensions: 764
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)