Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_G16
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz... 29 0.40
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 29 0.53
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 28 0.93
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 2.8
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 3.7
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 26 4.9
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 26 4.9
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 26 4.9
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 25 6.5
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas... 25 6.5
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 6.5
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p... 25 6.5
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.6
>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
Fub2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 29.5 bits (63), Expect = 0.40
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Frame = +3
Query: 93 SHILPSCNSNDVIS-------SSNDGKAMHILSRDLRTGWNNSRRKSLGNTDNSVERVFT 251
S+ P SND S S+N+ + I T N R S+G +DN E++FT
Sbjct: 199 SYFFPQLFSNDQESDGIIDNVSANEMERREIAELARETTELNELRSSIGQSDNGFEKIFT 258
Query: 252 HSLAIDI 272
DI
Sbjct: 259 KMFTKDI 265
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 29.1 bits (62), Expect = 0.53
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = -3
Query: 343 SLEKQIFA--VDLVSHLSIQYALPKAMSIARLCVNTLSTLLSVLPSDLRLELFQPVLKS 173
SL + F+ VS S + +P ++++ L V +S +L + SDL++ELF + +S
Sbjct: 777 SLRSEYFSSYFQFVSMESNSFDIPITVNLSHLTVEHMSIVLRHVYSDLKVELFDDLKES 835
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 28.3 bits (60), Expect = 0.93
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 355 LSQASLEKQIFAVDLVSHLSIQYALPKA 272
L QA LE+Q+ + S LS+Q A PKA
Sbjct: 357 LPQAKLERQLSNSTIASLLSLQVAFPKA 384
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -3
Query: 466 PSLAKLVHFQGYPRELLPVTVQGIPSM 386
P + + H QG+P P + G+P M
Sbjct: 410 PDMPSMPHVQGFPAPFPPFMMPGLPQM 436
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 3.7
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = -2
Query: 593 PSNIIRSLSRNTR*PXKT*TYVVPSRSPKHNLFFFTSNIYIRTLFSKTCAFSRLSPRTFT 414
PS + + +NT KT TYV PS S + + T I + + T A S+ T +
Sbjct: 248 PSTVTSTQRKNTATTTKTTTYVGPSPSASSVVAYTTKCIVVPVI---TTAASQSEAATPS 304
Query: 413 SNSTRHSINAHLFRL 369
++ + + H RL
Sbjct: 305 PSAAVYPLFPHGIRL 319
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 25.8 bits (54), Expect = 4.9
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -3
Query: 241 LSTLLSVLPSDLRLELFQPVLKSLERICIAFPSLLEDITSLLLQLGRICESQASLGHCWN 62
L T+L + ++ +FQ +L P+ I L + RICE A L HC N
Sbjct: 318 LGTMLRLFAE--KIPVFQKILLKPSTESDLMPTSFGKIKPLGFERFRICELYAELLHCSN 375
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 458 SKTCAFSRLSPRTFTSNSTRHSINAHLFRLYTRAIK 351
++TC FS+ + TS S I A +F LY A K
Sbjct: 175 AQTCIFSKANSNDTTSESIIVKILAKVFLLYEDAYK 210
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 460 LAKLVHFQGYPRELLPVTVQGIPSMHICLDFIPELLSQASLEK 332
LA+ H + P+ELLP T +G + C+ F L+ QA K
Sbjct: 936 LAQTFHLEFGPKELLPYTQEGNYVLVRCIAF--NLMLQAGALK 976
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -2
Query: 497 FFFTSNIYIRTLFSKTCAFSRLSPRTFTS--NSTRHSIN 387
FF S R LFS+T S+L R+F N +R++I+
Sbjct: 428 FFNDSKPDFRQLFSQTLVESKLQNRSFADIINGSRYNID 466
>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
PP1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -3
Query: 592 LQILLEACLETPDDQXKPELMWSLREVRSIICSFLHQIFISEPSLAKL 449
L +++ LE + ++ S E+R +C+ +IFIS+P L +L
Sbjct: 8 LDSIIDRLLEVRGSRPGRQVQLSEDEIR-FLCNKAREIFISQPILLEL 54
>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 243 LFQHYYLYYLVICVWNYSNRFSSLWKGYASPFHHY 139
LF YY YYL+IC+ + + + +P H +
Sbjct: 64 LFIIYYYYYLLICLSPHFFPIKRIRPFHENPLHSF 98
>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 256 LCVNTLSTLLSVLPSDLRLELFQPVLKSLERI 161
LCV S L LP D +FQP+ KS +I
Sbjct: 305 LCVYVESILRYGLPPDFSSVIFQPMAKSEVKI 336
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 42 SPNMGVSFQQCPSDAWDSHILPSCNSNDVISSSNDGKAMHILS 170
S + S P+ + SH L S +S+ V SSS+ G + LS
Sbjct: 103 SATLTSSSSASPTSSSSSHALSSSSSSLVASSSSSGMSSSSLS 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,620,249
Number of Sequences: 5004
Number of extensions: 57337
Number of successful extensions: 177
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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