Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G16
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573...    30   1.3  
04_04_0173 - 23294511-23294601,23294719-23294849,23295160-232954...    29   2.9  
03_01_0058 - 478708-478731,478802-478834,478953-479100,479423-48...    28   6.7  
01_05_0306 - 20662851-20663093,20663180-20663320,20666640-20667026     28   6.7  
11_01_0622 + 4996584-4996800,4996975-4997060,4997112-4997492,499...    27   8.9  
10_08_0427 + 17828007-17828570,17829788-17829904,17830319-178303...    27   8.9  
04_04_0302 - 24255456-24255935,24256723-24257604                       27   8.9  

>02_03_0300 + 17454622-17455402,17455535-17456977,17457015-17457317,
            17458429-17458519,17458623-17459757,17459998-17460077,
            17460449-17460533,17460614-17460705,17461079-17461147,
            17461227-17461263,17461351-17461433,17461695-17461840,
            17461868-17462138,17462245-17462281,17462428-17462721
          Length = 1648

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
 Frame = -3

Query: 292  QYALPKAMSIARLCVNTLSTLLSVLPSDLRLELFQ--PVLKSLE-----RICIAFPSLLE 134
            Q A P   ++AR+CV      L  LP  L+L L +  P+L+ ++     R+C     +L 
Sbjct: 1302 QMAFPVDTNVARICVRLGWVPLQPLPESLQLHLLELYPLLEHIQKYIWPRLCKLDQLILY 1361

Query: 133  DITSLLLQLGRICESQASLGHCWNDTPILGETAYVDS 23
            ++   ++  G++  S+ S  +C N  P+  E  +  S
Sbjct: 1362 ELHYQMITFGKVFCSK-SKPNC-NSCPMRAECKHFAS 1396


>04_04_0173 -
           23294511-23294601,23294719-23294849,23295160-23295483,
           23296016-23296147,23296225-23296373,23296536-23296670,
           23296997-23297090,23297199-23297318,23298096-23298182,
           23298273-23298386,23299089-23299270,23299960-23300023,
           23300191-23300337,23300636-23300845,23301048-23301217,
           23301355-23301477,23301589-23301661,23301765-23301857
          Length = 812

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -3

Query: 268 SIARLCVNTLSTLLSVLPSDLRLELFQPVLKSLERICIAFPSLLEDITSLLLQL 107
           ++ R  +N +  L++  PS+L+L     V K  ERIC     + E + S+L  L
Sbjct: 93  NVRRAALNGIKDLVAKHPSELKLHKVAIVEKLQERICDTDKVVRESLFSILQSL 146


>03_01_0058 -
           478708-478731,478802-478834,478953-479100,479423-480072
          Length = 284

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 150 FHHY*KILHHYYCSLAGYANPKRHW 76
           +HH  ++ HH + +  GYA P  HW
Sbjct: 153 YHHIHRV-HHEFTAPMGYAAPYAHW 176


>01_05_0306 - 20662851-20663093,20663180-20663320,20666640-20667026
          Length = 256

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = -3

Query: 220 LPSDLRLELFQPVLKSLERICIAFPSLLEDITSLLLQLG 104
           L S L LE+ Q V K L    I   +LLED  S+L +LG
Sbjct: 165 LDSKLDLEVLQKVAKLLCEPIITKKALLEDPESMLNELG 203


>11_01_0622 +
           4996584-4996800,4996975-4997060,4997112-4997492,
           4997585-4997605
          Length = 234

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 526 SLREVRSIICSFLHQIFISEPSLAKL 449
           SL+E+  I C F  Q  IS PSL +L
Sbjct: 124 SLKELTMIDCIFFRQFRISAPSLVRL 149


>10_08_0427 +
           17828007-17828570,17829788-17829904,17830319-17830384,
           17831466-17831572,17831939-17832017,17832861-17833574,
           17834040-17834148,17834263-17834429,17834876-17834950,
           17835025-17835117,17835202-17835294
          Length = 727

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 468 SDINI*CKKEQIMLRTSRRDHISSG-FXWSSGVSRQASN 581
           SD+N   ++E+ M  T  RDH  +G   W SG+S   S+
Sbjct: 224 SDLNSAIEEERYMDATYIRDHAGAGLLGWWSGISGNLSD 262


>04_04_0302 - 24255456-24255935,24256723-24257604
          Length = 453

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 523 LREVRSI--ICSFLHQIFISEPSLAKLVHFQGYPRE 422
           LR++ S+  +C  LH    +EP L K +H +G  R+
Sbjct: 213 LRDILSVERVCKTLHSAVRNEPLLWKSIHIEGDLRQ 248


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,072,996
Number of Sequences: 37544
Number of extensions: 335431
Number of successful extensions: 848
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)