Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_G16
(612 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5740| Best HMM Match : CDC14 (HMM E-Value=1.1) 79 2e-15
SB_43617| Best HMM Match : RVT_1 (HMM E-Value=3e-21) 33 0.18
SB_35376| Best HMM Match : RVT_1 (HMM E-Value=0) 33 0.18
SB_21844| Best HMM Match : RVT_1 (HMM E-Value=0) 33 0.18
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 33 0.18
SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_28762| Best HMM Match : RVT_1 (HMM E-Value=3.9e-23) 33 0.18
SB_19106| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_12274| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_11572| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_36867| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_29134| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.32
SB_34821| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_28110| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_45637| Best HMM Match : Amidohydro_3 (HMM E-Value=4.2e-22) 30 1.3
SB_15121| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_55313| Best HMM Match : RNA_pol_Rpb2_4 (HMM E-Value=4.9) 29 2.2
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_48134| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_38118| Best HMM Match : TBCA (HMM E-Value=3.2) 28 5.2
SB_32121| Best HMM Match : DUF1605 (HMM E-Value=5.4) 28 5.2
SB_52025| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_17900| Best HMM Match : CbiQ (HMM E-Value=0.33) 27 9.1
>SB_5740| Best HMM Match : CDC14 (HMM E-Value=1.1)
Length = 1156
Score = 79.4 bits (187), Expect = 2e-15
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 4/106 (3%)
Frame = -3
Query: 382 ICLDFIPELLSQASLEK----QIFAVDLVSHLSIQYALPKAMSIARLCVNTLSTLLSVLP 215
+C ++ SL K Q+F + L S+L +QY LPK++++A+ ++ +S+LL LP
Sbjct: 973 VCSSLHQMFIADPSLAKLVHFQLFGIQLASYLVLQYPLPKSLNVAKYILSRMSSLLVALP 1032
Query: 214 SDLRLELFQPVLKSLERICIAFPSLLEDITSLLLQLGRICESQASL 77
+ R F+P L SL R C AFP L D T L+QLG++ S A L
Sbjct: 1033 ASSREAFFRPALPSLVRFCRAFPPLHVDATPFLIQLGKVAASHAVL 1078
Score = 67.3 bits (157), Expect = 9e-12
Identities = 39/78 (50%), Positives = 51/78 (65%), Gaps = 5/78 (6%)
Frame = -3
Query: 610 AQESXALQILLEACLETPDDQXKPELMWS-----LREVRSIICSFLHQIFISEPSLAKLV 446
AQES A+Q+LLE CL P++Q K E S LRE++ +CS LHQ+FI++PSLAKLV
Sbjct: 934 AQESAAVQLLLEICL--PNEQDKQEESCSMHSCVLREIKCRVCSSLHQMFIADPSLAKLV 991
Query: 445 HFQGYPRELLPVTVQGIP 392
HFQ + +L V P
Sbjct: 992 HFQLFGIQLASYLVLQYP 1009
>SB_43617| Best HMM Match : RVT_1 (HMM E-Value=3e-21)
Length = 314
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 16 AFQNQRRQFRLIWGCHSNSVPVTLGI 93
AF N R QF ++ G HS+ VPVT G+
Sbjct: 91 AFLNNRNQFVVVDGSHSSQVPVTSGV 116
>SB_35376| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 931
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 16 AFQNQRRQFRLIWGCHSNSVPVTLGI 93
AF N R QF ++ G HS+ VPVT G+
Sbjct: 568 AFLNNRNQFVVVDGSHSSQVPVTSGV 593
>SB_21844| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 411
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 16 AFQNQRRQFRLIWGCHSNSVPVTLGI 93
AF N R QF ++ G HS+ VPVT G+
Sbjct: 176 AFLNNRNQFVVVDGSHSSQVPVTSGV 201
>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2529
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 16 AFQNQRRQFRLIWGCHSNSVPVTLGI 93
AF N R QF ++ G HS+ VPVT G+
Sbjct: 1294 AFLNNRNQFVVVDGSHSSQVPVTSGV 1319
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 16 AFQNQRRQFRLIWGCHSNSVPVTLGI 93
AF N R QF ++ G HS+ VPVT G+
Sbjct: 174 AFLNNRNQFVVVDGSHSSQVPVTSGV 199
>SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2124
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 16 AFQNQRRQFRLIWGCHSNSVPVTLGI 93
AF N R QF ++ G HS+ VPVT G+
Sbjct: 1958 AFLNNRNQFVVVDGSHSSQVPVTSGV 1983
>SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 788
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 16 AFQNQRRQFRLIWGCHSNSVPVTLGI 93
AF N R QF ++ G HS+ VPVT G+
Sbjct: 278 AFLNNRNQFVVVDGSHSSQVPVTSGV 303
>SB_28762| Best HMM Match : RVT_1 (HMM E-Value=3.9e-23)
Length = 409
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 16 AFQNQRRQFRLIWGCHSNSVPVTLGI 93
AF N R QF ++ G HS+ VPVT G+
Sbjct: 91 AFLNNRNQFVVVDGSHSSQVPVTSGV 116
>SB_19106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 16 AFQNQRRQFRLIWGCHSNSVPVTLGI 93
AF N R QF ++ G HS+ VPVT G+
Sbjct: 168 AFLNNRNQFVVVDGSHSSQVPVTSGV 193
>SB_12274| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 16 AFQNQRRQFRLIWGCHSNSVPVTLGI 93
AF N R QF ++ G HS+ VPVT G+
Sbjct: 246 AFLNNRNQFVVVDGSHSSQVPVTSGV 271
>SB_11572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 888
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 16 AFQNQRRQFRLIWGCHSNSVPVTLGI 93
AF N R QF ++ G HS+ VPVT G+
Sbjct: 307 AFLNNRNQFVVVDGSHSSQVPVTSGV 332
>SB_36867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 32.7 bits (71), Expect = 0.24
Identities = 23/62 (37%), Positives = 28/62 (45%)
Frame = -3
Query: 526 SLREVRSIICSFLHQIFISEPSLAKLVHFQGYPRELLPVTVQGIPSMHICLDFIPELLSQ 347
S RE SI S + F PS F G P L+ GIPS+ + D + LLS
Sbjct: 96 SAREFDSIPSSLFAREFDGIPSPLVACEFDGIPSPLVAREFDGIPSLLVVCDIV-HLLSS 154
Query: 346 AS 341
AS
Sbjct: 155 AS 156
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -3
Query: 520 REVRSIICSFLHQIFISEPSLAKLVHFQGYPRELLPVTVQGIPSMHICLDF--IPELL 353
RE I S + F S PS F G P L+ GIPS + +F IP LL
Sbjct: 86 REFDGIPSSLSAREFDSIPSSLFAREFDGIPSPLVACEFDGIPSPLVAREFDGIPSLL 143
>SB_29134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 32.3 bits (70), Expect = 0.32
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Frame = +3
Query: 60 SFQQCPSDAWDSHILPSCNSN---DVISSSNDG--KAMHILSRDLRT-GWNNSRRKSLGN 221
S+ Q D I P+ +SN DV+ + G AM SR+L T GWNN + LG+
Sbjct: 63 SYGQLACGHTDDVIKPAVHSNWKDDVLCITGGGGHTAMITDSRELYTCGWNNRGQLGLGD 122
Query: 222 TDNSVE 239
T N +E
Sbjct: 123 TINRIE 128
>SB_34821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 380
Score = 31.1 bits (67), Expect = 0.74
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = -3
Query: 211 DLRLELFQPVLKSLERICIAFPSLLEDITSLLLQLGRI---CESQASLGHCWNDTPILGE 41
DL +L + KSL+ I +F + E + ++LLQ+ R+ C A LGH W+ I +
Sbjct: 72 DLSHDLVEAFTKSLD-IQPSFTRIHELLVTMLLQVLRVWTVCLVLADLGHTWSRNDIEDD 130
Query: 40 TAYVDSERQPETK 2
+ +PE K
Sbjct: 131 CIWEGRGFRPEDK 143
>SB_28110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 257
Score = 31.1 bits (67), Expect = 0.74
Identities = 23/62 (37%), Positives = 27/62 (43%)
Frame = -3
Query: 526 SLREVRSIICSFLHQIFISEPSLAKLVHFQGYPRELLPVTVQGIPSMHICLDFIPELLSQ 347
S RE SI S + F PS F G P L+ GIPS + D + LLS
Sbjct: 121 SAREFDSIPSSLFAREFDGIPSPLVACEFDGIPSPLVAREFDGIPSPLVVCDIV-HLLSS 179
Query: 346 AS 341
AS
Sbjct: 180 AS 181
>SB_45637| Best HMM Match : Amidohydro_3 (HMM E-Value=4.2e-22)
Length = 579
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +3
Query: 72 CPSDAWDSHI---LPSCNSNDVISSSNDGKAMHILSRDLRTGWNNSRRKSLGNTDNSVE 239
C WD I LP N+N + + + IL ++L GW N++ + D SV+
Sbjct: 152 CVFRGWDPEIIRDLPGLNANVIEREFSAAVPVAILGQNLHAGWVNNKAFEVLGIDESVQ 210
>SB_15121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 378
Score = 30.3 bits (65), Expect = 1.3
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = -3
Query: 397 IPSMHICLDFIPELLSQASLEKQIFAVDLVSHLSIQYALPKAMSIARLCVNTLSTLLSVL 218
+P M I + ++P LL + + L + I LP + + R+ + L TL V+
Sbjct: 256 LPVMRIVIFYLPTLLPVMRIVICYLPI-LRPVMRIVIYLPTLLPVMRIAIFYLPTLRPVM 314
Query: 217 PSDLRLELFQ-PVLKSLERICIAFPSLL 137
R+ +F P+L+ + RI I P+LL
Sbjct: 315 ----RIVIFYLPILRPVMRIVIYLPTLL 338
Score = 28.7 bits (61), Expect = 3.9
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = -3
Query: 394 PSMHICLDFIPELLSQASLEKQIFAVDLVSH-LSIQYALPKAMSIARLCVNTLSTLLSVL 218
P M I + ++P L + + IF + + + I LP + + R+ + L TLL V+
Sbjct: 216 PVMRIVIFYLPTL--RPVMRIAIFYLPTLRPVMRIVIYLPTLLPVMRIVIFYLPTLLPVM 273
Query: 217 PSDLRLELFQPVLKSLERICIAFPSLL 137
+ + P+L+ + RI I P+LL
Sbjct: 274 RIVI---CYLPILRPVMRIVIYLPTLL 297
>SB_55313| Best HMM Match : RNA_pol_Rpb2_4 (HMM E-Value=4.9)
Length = 203
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -2
Query: 533 YVVPSRSPKHNLFFFTSNIYIRTLFSKTCAFSRLSPRTFTSNSTRHSI 390
++ SR+P++NLF TS LF KT R + TS + R+++
Sbjct: 74 FIKTSRAPRNNLFIKTSRTRRNNLFIKTSRAPRNNLFIKTSRAPRNNL 121
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -2
Query: 533 YVVPSRSPKHNLFFFTSNIYIRTLFSKTCAFSRLSPRTFTSNSTRHSI 390
++ SR+P++NLF TS LF KT R + TS + R+++
Sbjct: 110 FIKTSRAPRNNLFIKTSRARRNNLFIKTSRARRNNLFIKTSRAPRNNL 157
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -2
Query: 533 YVVPSRSPKHNLFFFTSNIYIRTLFSKTCAFSRLSPRTFTSNSTRHSI 390
++ SR+P++NLF TS LF KT R + TS + R+++
Sbjct: 62 FIKTSRAPRNNLFIKTSRAPRNNLFIKTSRTRRNNLFIKTSRAPRNNL 109
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -2
Query: 533 YVVPSRSPKHNLFFFTSNIYIRTLFSKTCAFSRLSPRTFTSNSTRHSI 390
++ SR+P++NLF TS LF KT R + TS + R+++
Sbjct: 98 FIKTSRAPRNNLFIKTSRAPRNNLFIKTSRARRNNLFIKTSRARRNNL 145
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 533 YVVPSRSPKHNLFFFTSNIYIRTLFSKTCAFSRLSPRTFTSNSTRH 396
++ SR+P++NLF TS LF KT R + TS + R+
Sbjct: 146 FIKTSRAPRNNLFIKTSRARRNNLFIKTSRARRNNLFIKTSRARRN 191
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 28.7 bits (61), Expect = 3.9
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = -3
Query: 283 LPKAMSIARLCVNTLSTLLSVLPSDLRLELFQ-PVL--KSLERICIAFPSLLEDITSLLL 113
LP ++ R V T STL+ +LPS + L P+L S+ A P ++ +
Sbjct: 957 LPNITTVNRTTVPTNSTLVEILPSMPTMNLTSVPILNTSSIVANLSATPISFASVSGSIN 1016
Query: 112 QLGRICESQASLGHCWNDTPILGETAYVDSER-QPET 5
+ AS N T I+ T Y+++ Q ET
Sbjct: 1017 ITWSMSSISASPNRTLNGTSIVNNTMYMNATSVQSET 1053
>SB_48134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -3
Query: 367 IPELLSQASLEKQIFAVDLVSHLSIQ-YALPKAMSIARLCVNTLSTLLSVL 218
IP+LL+ +L K+I+A+D+ + S+Q +A S R C L L L
Sbjct: 36 IPKLLTYNTLVKEIYAIDIGNVQSVQVFASDNDDSTTRGCFRDLREYLPSL 86
>SB_38118| Best HMM Match : TBCA (HMM E-Value=3.2)
Length = 675
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 367 IPELLSQASLEKQIFAVDLVSHLSIQ-YALPKAMSIARLCVNTLSTLL 227
IP+LL+ +L K+I A+D+ + S+Q +AL S R C L L
Sbjct: 215 IPKLLTYNTLVKEINAIDIGNVQSVQVFALDNEDSTTRGCFRDLREYL 262
>SB_32121| Best HMM Match : DUF1605 (HMM E-Value=5.4)
Length = 328
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 367 IPELLSQASLEKQIFAVDLVSHLSIQ-YALPKAMSIARLCVNTLSTLL 227
IP+LL+ +L K+I A+D+ + S+Q +AL S R C L L
Sbjct: 144 IPKLLTYNTLVKEINAIDIGNVRSVQVFALDNEDSTTRGCFRDLREYL 191
>SB_52025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 27.9 bits (59), Expect = 6.9
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = -3
Query: 397 IPSMHICLDFIPEL-LSQASLEKQIFAVDLVSHLSIQYALPKAMSIARLCVNTLSTLLSV 221
+P++ L +P L A L + + ++SHL A+ +S + LS LL+V
Sbjct: 42 LPNLSYLLAVLPYLSYLSAMLPNLSYLLAILSHLLYLLAVLPNLSYLLAVLPNLSYLLAV 101
Query: 220 LPSDLRLELFQPVLKSLERICIAFPSL 140
LP+ L VL +L + P+L
Sbjct: 102 LPN---LSYLLAVLPNLSYLLAVLPNL 125
>SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2468
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -3
Query: 139 LEDITSLLLQLGRICESQAS--LGHCWNDTPILGET 38
LED T+LLLQ+ R+ S + L H LGET
Sbjct: 1519 LEDATTLLLQISRLSTSTRNTVLAHLLEGAQRLGET 1554
>SB_17900| Best HMM Match : CbiQ (HMM E-Value=0.33)
Length = 766
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 87 WDSHILPSCNSNDVISSSNDGKAMHILSRDLRTGWNNSRRKSL 215
+D+ L +C +ND I N+ A ++ +L G+N++ +L
Sbjct: 267 FDAISLSACITNDTIMKKNNNTANGVVYTELLEGYNSALENAL 309
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,031,166
Number of Sequences: 59808
Number of extensions: 416412
Number of successful extensions: 1117
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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