Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G15
         (862 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    24   1.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   9.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   9.5  

>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 424 INKSEIEIAACQWMDVDEYL 365
           +++SE+EI AC++  +D  L
Sbjct: 400 LSQSELEITACKFFSIDNAL 419



 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -1

Query: 424 INKSEIEIAACQWMDVDEYL 365
           ++++E+EI AC++  +D  L
Sbjct: 347 LSQNELEITACKFFSIDNAL 366


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = +3

Query: 126  IITILRGKIVVLWPFAFVVNIYSNEMYYSFESSK 227
            ++T+ +  + + WPF    NI  +E       SK
Sbjct: 1285 LLTLKKDYLHIKWPFGVKTNITYDESTQEVHISK 1318


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = +3

Query: 126  IITILRGKIVVLWPFAFVVNIYSNEMYYSFESSK 227
            ++T+ +  + + WPF    NI  +E       SK
Sbjct: 1285 LLTLKKDYLHIKWPFGVKTNITYDESTQEVHISK 1318


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,047
Number of Sequences: 336
Number of extensions: 4402
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23866870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)