Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G14
         (414 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    22   2.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   3.6  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            20   8.3  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    20   8.3  

>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 6   FIYKLWAIRAVXINTKQSKLQIKDINNIF 92
           FI  +W      +N KQS   I   +N F
Sbjct: 118 FIKNIWVPDTFFVNEKQSYFHIATTSNEF 146


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -2

Query: 395  HIPSTSRPGRQTGAPCEPPSSAAWTASRRSCRGAGRPAPT 276
            H PSTS   + T     PPS+     ++ +     RP  T
Sbjct: 1159 HKPSTSSWQKPTKPSYRPPSTTNHWQTKTTTSTTTRPTTT 1198


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 327 GCARWWLAGRAGLPARSARRWDMCRRT 407
           G   +WLA  +G P  +A   + C  T
Sbjct: 32  GGGGFWLAAASGAPHPAALPIEGCNET 58


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 327 GCARWWLAGRAGLPARSARRWDMCRRT 407
           G   +WLA  +G P  +A   + C  T
Sbjct: 32  GGGGFWLAAASGAPHPAALPIEGCNET 58


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,053
Number of Sequences: 336
Number of extensions: 1294
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9068614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)