Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G14
         (414 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    28   0.66 
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    27   1.5  
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    26   2.7  
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    25   4.7  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   6.1  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 27.9 bits (59), Expect = 0.66
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -1

Query: 348  RATIERSLDRFEEILSRRGPPGADLVARYVVAEPRTFDIDEPVS 217
            +A +E+ L   E++L+   P G D++ +Y+VA      + + V+
Sbjct: 1080 KADLEKELP--EDVLNAEFPDGTDVITQYIVAASSQITVTDAVA 1121


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 398 AHIPSTSRPGRQTGAPCEPPSSAAWTASR 312
           +++P+ S P R T +P  PP S++ T  R
Sbjct: 404 SNVPAYSTPARPTESPPPPPISSSSTTPR 432


>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 158 TYRCSVINVGSDLFCIITKFIFKYIINVF 72
           T RC  + + S + CI+T+ I    +NVF
Sbjct: 39  TARCISVLLASSVCCILTRLIIGPSLNVF 67


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 307 DLLEAVQAALDGGSQGAPV 363
           D++EAV+AA +GG+ G  V
Sbjct: 229 DMIEAVKAATNGGAHGTLV 247


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 408 VFGGTYPIDEPTGPADRRALRATIERSLDRFEEILSRRGPPG 283
           V G T+P+ +  GP  R+   A+  R L      L RR P G
Sbjct: 576 VSGQTFPVTDVPGPHSRKVTTASKNR-LKMLVFRLIRRSPNG 616


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,345,226
Number of Sequences: 5004
Number of extensions: 20635
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)