Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G14
         (414 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)                     30   0.87 
SB_38997| Best HMM Match : ResIII (HMM E-Value=0.0025)                 29   1.1  
SB_35838| Best HMM Match : NCD3G (HMM E-Value=0.032)                   29   1.5  
SB_44102| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_10648| Best HMM Match : 7TM-7TMR_HD (HMM E-Value=3.4)               28   2.6  
SB_5507| Best HMM Match : TP2 (HMM E-Value=4)                          27   4.6  
SB_53226| Best HMM Match : ResIII (HMM E-Value=0.45)                   27   4.6  
SB_12391| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3)                27   8.1  

>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 937

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 407 CSAAHIPSTSRPGRQTGAPCEPPSSAAWTA 318
           C++AH+   + PG  T  P  PP+    TA
Sbjct: 571 CNSAHVSPVTEPGTSTEGPARPPARPPPTA 600


>SB_38997| Best HMM Match : ResIII (HMM E-Value=0.0025)
          Length = 698

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = -2

Query: 407 CSAAHIPSTSRPGRQTGAPCEPPSSAAWTASRRSCRGAGRPAPTWWRATSWR 252
           C A H+ + S   R  G P  P    A T+++    G G    T W  + +R
Sbjct: 492 CVATHVEADSSRRRPPGVPSLPWDLVAATSAKMYLAGQGGSGKTEWAVSMFR 543


>SB_35838| Best HMM Match : NCD3G (HMM E-Value=0.032)
          Length = 589

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 301 RQDLLEAVQAALDGGSQGAPVCRPGRLVDG 390
           R DL  +V+    GG+Q  P C PG   +G
Sbjct: 215 RDDLEGSVKLPASGGTQDCPPCNPGMTANG 244


>SB_44102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -2

Query: 158 TYRCSVINVGSDLFCIITKFIFKYIINVFNLQLTLFSVY 42
           T+ CS    G++L+  +T  I   ++++ +  + LF+VY
Sbjct: 16  TFECSWTQTGTELWSYVTLCILSSVLSLISNSVFLFTVY 54


>SB_10648| Best HMM Match : 7TM-7TMR_HD (HMM E-Value=3.4)
          Length = 272

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -2

Query: 161 FTYRCSVINVGSDLFCIITKFIFKYIINVFNLQLTLFSVYXHRAYR 24
           + YR SVI++      +I    ++Y ++V +L      V  H +YR
Sbjct: 159 YRYRVSVISLSCICHIVIVYLSYRYRVSVISLSCICHIVIVHPSYR 204



 Score = 27.1 bits (57), Expect = 6.1
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -2

Query: 161 FTYRCSVINVGSDLFCIITKFIFKYIINVFNLQLTLFSVYXHRAYR 24
           + YR SVI++      +I    ++Y  +V +L      V  H +YR
Sbjct: 5   YRYRASVISLSCICHIVIVYLSYRYRASVISLSCICHIVIVHLSYR 50


>SB_5507| Best HMM Match : TP2 (HMM E-Value=4)
          Length = 524

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +3

Query: 336 RWWLAGRAGL-PARSARRWDMCRR 404
           RWW  GRAG   ARS RR D   +
Sbjct: 272 RWWPRGRAGYRSARSGRRRDSAHK 295


>SB_53226| Best HMM Match : ResIII (HMM E-Value=0.45)
          Length = 880

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 377 RPGRQTGAPCEPPSSAAWTASRRSCRGAGRPAPTWWRATSWR 252
           RPG  + AP  P    A T++R    G G    T W  + +R
Sbjct: 633 RPGEPSTAPSLPCDLVAATSARMYLAGQGGSGKTEWAVSMFR 674


>SB_12391| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 695

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 300 RRGPPGADLVARYVVAEPRTFDIDEPVS 217
           RRGPPG   + R  +     F IDE +S
Sbjct: 387 RRGPPGIHSLHRLTMNRRNMFPIDESIS 414


>SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3)
          Length = 660

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -2

Query: 404 SAAHIPSTSRPGRQT--GAPCEPPSSAAWTASRRSCRGAGRPAPTWWRATS 258
           S++   S S PG ++  G+   PPS  +   SR   R    P PT  RA+S
Sbjct: 543 SSSSTCSLSSPGMRSSVGSITPPPSRTSTPRSRAGSRTRTPPTPTSSRASS 593


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,752,355
Number of Sequences: 59808
Number of extensions: 184445
Number of successful extensions: 556
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)