Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G14
         (414 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   2.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   2.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   2.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    20   9.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    20   9.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    20   9.6  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 6   FIYKLWAIRAVXINTKQSKLQIKDINNIF 92
           FI  +W      +N KQS   I   +N F
Sbjct: 89  FIKNIWVPDTFFVNEKQSYFHIATTSNEF 117


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 6   FIYKLWAIRAVXINTKQSKLQIKDINNIF 92
           FI  +W      +N KQS   I   +N F
Sbjct: 89  FIKNIWVPDTFFVNEKQSYFHIATTSNEF 117


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 6   FIYKLWAIRAVXINTKQSKLQIKDINNIF 92
           FI  +W      +N KQS   I   +N F
Sbjct: 28  FIKNIWVPDTFFVNEKQSYFHIATTSNEF 56


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 84  NIFENKFRNDTK*IRSN 134
           N+F N F +D K I +N
Sbjct: 528 NMFYNNFNSDIKSISNN 544


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = -2

Query: 134 VGSDLFCIITKFIFK 90
           +GS +F II++++F+
Sbjct: 341 IGSIVFYIISRYVFR 355


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 84  NIFENKFRNDTK*IRSN 134
           N+F N F +D K I +N
Sbjct: 528 NMFYNNFNSDIKSISNN 544


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,452
Number of Sequences: 438
Number of extensions: 1695
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)