Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G14
         (414 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35770.1 68418.m04285 sterile apetala (SAP) identical to ster...    33   0.076
At5g66880.1 68418.m08431 serine/threonine protein kinase, putati...    29   1.2  
At3g50500.1 68416.m05523 protein kinase, putative similar to abs...    27   3.8  
At5g27870.1 68418.m03343 pectinesterase family protein similar t...    27   6.6  
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    26   8.7  

>At5g35770.1 68418.m04285 sterile apetala (SAP) identical to sterile
           apetala (GI:9758652) [Arabidopsis thaliana].
          Length = 446

 Score = 33.1 bits (72), Expect = 0.076
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 327 GCARWWLAGRAGLPARSARRWD 392
           GC RWW+   AG+P R+   WD
Sbjct: 238 GCGRWWVGLFAGVPGRAFHIWD 259


>At5g66880.1 68418.m08431 serine/threonine protein kinase, putative
           similar to serine-threonine protein kinase [Triticum
           aestivum] gi|2055374|gb|AAB58348
          Length = 361

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -1

Query: 399 GTYPIDEPTGPADRRALRATIERSLDRFEEILS--RRGPPGADLVARYVVAEPRT 241
           G YP ++P  P D    R TI+R L     I    R  P    L++R  VA+P T
Sbjct: 214 GAYPFEDPEEPRD---YRKTIQRILSVKYSIPDDIRISPECCHLISRIFVADPAT 265


>At3g50500.1 68416.m05523 protein kinase, putative similar to
           abscisic acid-activated protein kinase [Vicia faba]
           gi|6739629|gb|AAF27340
          Length = 362

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = -1

Query: 399 GTYPIDEPTGPADRRALRATIERSLDRFEEILS--RRGPPGADLVARYVVAEPRT 241
           G YP ++P  P D    R TI+R L     I       P    L++R  VA+P T
Sbjct: 215 GAYPFEDPQEPRD---YRKTIQRILSVTYSIPEDLHLSPECRHLISRIFVADPAT 266


>At5g27870.1 68418.m03343 pectinesterase family protein similar to
           pectinesterase (EC 3.1.1.11) from Salix gilgiana
           GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus
           vulgaris SP|Q43111; contains Pfam profile PF01095
           pectinesterase
          Length = 732

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = -2

Query: 410 SCSAAHIPSTSRPGRQTGAPCEPPSSAAWTASRRSCRGAGRPAPT 276
           S S    PSTS P    G+P + PSS    ++       G P  T
Sbjct: 588 SPSTVVTPSTSPPAGHLGSPSDTPSSVVSPSTSLPAGQLGAPPAT 632



 Score = 26.6 bits (56), Expect = 6.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 389 PSTSRPGRQTGAPCEPPSSAAWTASRRSCRGAGRPAPT 276
           PSTS P    G+P + PSS    ++       G P+ T
Sbjct: 639 PSTSPPAGHLGSPSDTPSSLVSPSTSPPAGHLGSPSDT 676



 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -2

Query: 389 PSTSRPGRQTGAPCEPPSSAAWTASRRSCRGAGRPAPT 276
           PSTS P  Q GAP   PS     ++       G P+ T
Sbjct: 617 PSTSLPAGQLGAPPATPSMVVSPSTSPPAGHLGSPSDT 654



 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 389 PSTSRPGRQTGAPCEPPSSAAWTASRRSCRGAGRPA 282
           PSTS P    G+P + PSS    ++  S   +  P+
Sbjct: 661 PSTSPPAGHLGSPSDTPSSVVTPSASPSTSPSASPS 696


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 398 AHIPSTSRPGRQTGAPCEPPSSAA 327
           A  PS S+P R + +P +PP S++
Sbjct: 163 ASAPSKSQPPRSSVSPAQPPKSSS 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,234,490
Number of Sequences: 28952
Number of extensions: 117839
Number of successful extensions: 330
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)