Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G13
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac...    48   6e-07
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S...    48   8e-07
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    26   3.6  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   4.8  
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    25   8.4  

>SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein
           L35a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 48.4 bits (110), Expect = 6e-07
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -3

Query: 324 PRHG-RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKK 157
           P  G RLY KA    ++R     H  T+++K+EG   + +A FY GK   YVY++ K
Sbjct: 2   PAQGHRLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSK 58



 Score = 24.6 bits (51), Expect = 8.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 101 WGKVTRPHGN 72
           WG + RPHGN
Sbjct: 69  WGTIARPHGN 78


>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 48.0 bits (109), Expect = 8e-07
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = -3

Query: 324 PRHG-RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTP 148
           P  G RLY KA    ++R     H  T+L+K+EG   + +A FY GK   +VY++ K  P
Sbjct: 2   PAQGHRLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNK--P 59

Query: 147 IPG 139
           + G
Sbjct: 60  VRG 62



 Score = 25.4 bits (53), Expect = 4.8
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 101 WGKVTRPHGN 72
           WG V+RPHGN
Sbjct: 69  WGTVSRPHGN 78


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 27  GQGRLSLNLARTLPVVAMWAGHLAPV*HAAWFFC 128
           G GR+  N+ + L +  M A HL P  H  WF C
Sbjct: 181 GNGRV--NIEKCL-IAWMAAAHLKPKDHELWFTC 211


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 9   LLSHRLGQGRLSLNLARTLPVVAMWAGHLAPV*HAAWFFC 128
           L+ ++LG+  +   L+R L +  +W   + P     W FC
Sbjct: 559 LVKNKLGRVYVDTRLSRMLGLPPLWVAGMTPT-SVPWQFC 597


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +1

Query: 109 TQLGFFATGTSGNWCPLLSSVHIDAMLAS 195
           T LGFF   T  N  P    VH  +M AS
Sbjct: 339 TALGFFTDNTPENPLPTSYQVHSHSMKAS 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,893,872
Number of Sequences: 5004
Number of extensions: 35240
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)