Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_G13
(497 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756... 62 2e-10
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009 62 2e-10
02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451 60 1e-09
07_01_0308 + 2203597-2203774,2203886-2204066,2204141-2204282,220... 34 0.055
05_06_0032 - 25067996-25068156,25068746-25068815,25069385-250695... 30 0.90
04_03_0827 - 20108937-20109046,20109146-20109234,20109400-201095... 30 1.2
04_04_1576 - 34551095-34552645 27 6.3
11_02_0056 + 7828453-7828717,7829425-7829427,7829658-7829912,782... 27 8.4
01_05_0581 + 23404809-23405885,23406434-23406580,23406688-23407056 27 8.4
>05_07_0069 +
27475072-27475136,27475237-27475465,27475532-27475630,
27476172-27476287,27476670-27476757
Length = 198
Score = 62.1 bits (144), Expect = 2e-10
Identities = 26/62 (41%), Positives = 39/62 (62%)
Frame = -3
Query: 336 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKK 157
K + + RLY + GYKR NQ+ENT+LL++EG + + +YAGK YVY+AK
Sbjct: 2 KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKT 61
Query: 156 RT 151
++
Sbjct: 62 KS 63
Score = 29.5 bits (63), Expect = 1.6
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1
Query: 101 WGKVTRPHGN 72
WGKVTRPHGN
Sbjct: 72 WGKVTRPHGN 81
>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
Length = 111
Score = 62.1 bits (144), Expect = 2e-10
Identities = 26/62 (41%), Positives = 39/62 (62%)
Frame = -3
Query: 336 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKK 157
K + + RLY + GYKR NQ+ENT+LL++EG + + +YAGK YVY+AK
Sbjct: 2 KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKT 61
Query: 156 RT 151
++
Sbjct: 62 KS 63
Score = 29.5 bits (63), Expect = 1.6
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1
Query: 101 WGKVTRPHGN 72
WGKVTRPHGN
Sbjct: 72 WGKVTRPHGN 81
>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
Length = 112
Score = 60.1 bits (139), Expect = 1e-09
Identities = 23/54 (42%), Positives = 35/54 (64%)
Frame = -3
Query: 312 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRT 151
RLY + GYKR NQ+ENT+L+++EG + + +Y GK YVY+AK ++
Sbjct: 11 RLYVRGTILGYKRSKSNQYENTSLVQIEGVNTKEEVAWYCGKRMAYVYKAKTKS 64
Score = 29.5 bits (63), Expect = 1.6
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1
Query: 101 WGKVTRPHGN 72
WGKVTRPHGN
Sbjct: 73 WGKVTRPHGN 82
>07_01_0308 +
2203597-2203774,2203886-2204066,2204141-2204282,
2204371-2204440,2204546-2204715
Length = 246
Score = 34.3 bits (75), Expect = 0.055
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 52 WLGHCQXLPCGRVTLPQXSTQLGFFATGTSGNWCPLLSSVHIDAMLA 192
+LG Q + CGR GFFA G+WC LL+ ++I + A
Sbjct: 149 FLGTLQDVSCGRDLKNFLLVIAGFFAAAIIGSWCNLLTVIYIGFVCA 195
>05_06_0032 -
25067996-25068156,25068746-25068815,25069385-25069532,
25069611-25069726,25069799-25069877,25069960-25070030,
25070139-25070348,25070445-25070453,25070824-25070968,
25071297-25071332,25071428-25071494,25071591-25071624
Length = 381
Score = 30.3 bits (65), Expect = 0.90
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +2
Query: 32 G*VILELGSDTASXCHVGGSPCPSXARSLVFLPRGPPGIGVLF 160
G + ++ GSD S CHV G+P L +G PG GV F
Sbjct: 311 GSIFMDCGSDLGSACHVPGNPA---------LRQGKPGFGVGF 344
>04_03_0827 -
20108937-20109046,20109146-20109234,20109400-20109548,
20109801-20109942,20110530-20110645,20111141-20111458
Length = 307
Score = 29.9 bits (64), Expect = 1.2
Identities = 23/65 (35%), Positives = 28/65 (43%)
Frame = +2
Query: 83 GGSPCPSXARSLVFLPRGPPGIGVLFLALYT*TQCLPA*KTASLRSFAPSTLRRAVFSCW 262
GGSP P +P+ PPG LA + Q L R+FA T A SC
Sbjct: 81 GGSPFP--------VPQPPPGADPNALASFKQAQALAGGPLVQARNFAVMTGANAGISCV 132
Query: 263 LRRPR 277
+RR R
Sbjct: 133 MRRIR 137
>04_04_1576 - 34551095-34552645
Length = 516
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 165 LCTHRRNACQHKRLHHYGLLLL 230
LC H AC RLH +GL LL
Sbjct: 77 LCNHLLIACFKSRLHRHGLRLL 98
>11_02_0056 +
7828453-7828717,7829425-7829427,7829658-7829912,
7829997-7830124,7831063-7831207,7832178-7832275,
7833253-7833395,7835119-7835239,7835492-7835584,
7835712-7835828
Length = 455
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 234 VEGAKDRNDAVFYAGKHC-VYVYRAKKRTPIPGGPRGKKTKLRAXL 100
++ ++ V A +H + V + K +TP+P G +KLR L
Sbjct: 222 LQDGREFEGTVLNADRHSDIAVVKIKSKTPLPSANLGSSSKLRPGL 267
>01_05_0581 + 23404809-23405885,23406434-23406580,23406688-23407056
Length = 530
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +2
Query: 203 TASLRSFAPSTLRRAVFSCWLRRPRLYPVNTAFAYSLPWRGFDAL 337
T +L S+ P + R F+ W+R V +++PW G L
Sbjct: 153 TVTLTSYFPES-ERDTFAGWIRAVAAKGVRDLTLHNIPWSGLHVL 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,755,009
Number of Sequences: 37544
Number of extensions: 293947
Number of successful extensions: 708
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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