Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G13
         (497 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18396| Best HMM Match : Ribosomal_L35Ae (HMM E-Value=0)             79   2e-15
SB_58335| Best HMM Match : SMC_N (HMM E-Value=0.023)                   32   0.30 
SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.7  
SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  

>SB_18396| Best HMM Match : Ribosomal_L35Ae (HMM E-Value=0)
          Length = 115

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 37/73 (50%), Positives = 47/73 (64%)
 Frame = -3

Query: 312 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 133
           RLY K +  G+KRGLRNQH NT+L+K+EG  +R +  FY GK   +VYRAK +T   G  
Sbjct: 6   RLYTKGIVLGFKRGLRNQHPNTSLVKIEGVDERKNTEFYLGKRLAFVYRAKNKTVAKGDK 65

Query: 132 RGKKTKLRAXLGQ 94
             K TKLR   G+
Sbjct: 66  --KATKLRVIWGK 76



 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 101 WGKVTRPHGNXWQCPSQVQG*PTLPKAMG 15
           WGKVTR HGN     ++ +     PKAMG
Sbjct: 74  WGKVTRAHGNSGVVRAKFRH-NLPPKAMG 101


>SB_58335| Best HMM Match : SMC_N (HMM E-Value=0.023)
          Length = 354

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -3

Query: 210 DAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAXLGQGDPPTWQXLAVSEPS 49
           D+ F+AG   +     K   P+ GGPR +  +LR      D      L + EPS
Sbjct: 168 DSTFWAGPETISRRMLKGEVPVQGGPRKEAKRLRLGFAGDDFSYAISLGLPEPS 221


>SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1155

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 177 YVYRAKKRTPIPGGPRGKKTKLRAXLGQGDPPTW 76
           +++  +   P  GG RGK  K  + L  GD  TW
Sbjct: 188 HLHVVRTHMPYGGGKRGKSKKNSSTLDTGDLETW 221


>SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 598

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = -3

Query: 234 VEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAXLGQGDPPTW 76
           VE     N+     G   ++V R+    P   G RGK  K  + L  GD  TW
Sbjct: 216 VETVVQLNEQFVLQGNFHLHVVRS--HMPFGAGKRGKSKKNSSTLDTGDLETW 266


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,299,742
Number of Sequences: 59808
Number of extensions: 311191
Number of successful extensions: 725
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)