Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_G13
(497 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41264-2|AAA82422.1| 124|Caenorhabditis elegans Ribosomal prote... 85 2e-17
Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p... 29 1.4
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr... 29 1.4
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ... 29 1.4
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ... 29 1.4
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ... 27 5.7
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage... 27 5.7
AC006720-9|AAF60443.2| 480|Caenorhabditis elegans Hypothetical ... 27 5.7
U53336-7|AAA96179.1| 642|Caenorhabditis elegans Hypothetical pr... 27 10.0
>U41264-2|AAA82422.1| 124|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 33 protein.
Length = 124
Score = 85.4 bits (202), Expect = 2e-17
Identities = 40/77 (51%), Positives = 53/77 (68%)
Frame = -3
Query: 345 VLRKASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYR 166
V R+ S P GRLY KA+FTG+KRGLR Q E+T+LLK+EG ++ DA FYAGK VY+Y+
Sbjct: 6 VARRPSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYK 65
Query: 165 AKKRTPIPGGPRGKKTK 115
A +T G +T+
Sbjct: 66 AHNKTLKTGHTVATRTR 82
Score = 29.1 bits (62), Expect = 1.9
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 101 WGKVTRPHGN 72
WGK+TRPHGN
Sbjct: 85 WGKITRPHGN 94
>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -3
Query: 264 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 115
N E KVE AKD+ KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -3
Query: 264 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 115
N E KVE AKD+ KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -3
Query: 264 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 115
N E KVE AKD+ KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -3
Query: 264 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 115
N E KVE AKD+ KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -3
Query: 264 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 115
N E KVE AKD+ KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -3
Query: 264 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 115
N E KVE AKD+ KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
protein Y39A1B.3 protein.
Length = 1499
Score = 27.5 bits (58), Expect = 5.7
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -1
Query: 293 YSQDISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELRRG 153
+S D+ +V+A S L+ RL TV +Q ++ SIAS + +RG
Sbjct: 141 HSVDVELVHAVSMFVILTQRL----TVQLQLYVSKSIASANQQAKRG 183
>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
compensation protein protein.
Length = 1455
Score = 27.5 bits (58), Expect = 5.7
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -1
Query: 293 YSQDISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELRRG 153
+S D+ +V+A S L+ RL TV +Q ++ SIAS + +RG
Sbjct: 141 HSVDVELVHAVSMFVILTQRL----TVQLQLYVSKSIASANQQAKRG 183
>AC006720-9|AAF60443.2| 480|Caenorhabditis elegans Hypothetical
protein Y17G9B.1 protein.
Length = 480
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 160 EEDTNSRRSPWQKNQAACXTGAR*PAHMATTGSVRAK 50
E++TN+ R W+K AA T R A S+ +K
Sbjct: 56 EQETNNLREEWEKEYAALCTSGRTLARPNPNSSIFSK 92
>U53336-7|AAA96179.1| 642|Caenorhabditis elegans Hypothetical
protein K07C11.9 protein.
Length = 642
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 175 IDAMLASIKDCIITVFCSFNLEESGVLVL 261
IDAM+ D +++V S LE+SG+L L
Sbjct: 492 IDAMIEGNSDVLVSVQVSEMLEKSGILEL 520
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,847,002
Number of Sequences: 27780
Number of extensions: 220586
Number of successful extensions: 549
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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