Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G13
         (497 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC) si...    55   3e-08
At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB) id...    55   3e-08
At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA) si...    55   3e-08
At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD) ri...    54   4e-08
At3g10980.2 68416.m01324 expressed protein                             31   0.57 
At3g10980.1 68416.m01325 expressed protein                             31   0.57 
At2g38550.1 68415.m04736 expressed protein contains Pfam profile...    27   9.3  

>At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC)
           similar to ribosomal protein L33B GB:NP_014877 from
           [Saccharomyces cerevisiae]
          Length = 112

 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 21/53 (39%), Positives = 33/53 (62%)
 Frame = -3

Query: 312 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKR 154
           RLY +    GYKR   NQ+ NT+L+++EG   + +  +Y GK   Y+Y+AK +
Sbjct: 11  RLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKAKTK 63



 Score = 29.5 bits (63), Expect = 1.3
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -1

Query: 101 WGKVTRPHGN 72
           WGKVTRPHGN
Sbjct: 73  WGKVTRPHGN 82


>At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB)
           identical to GB:CAB81600 from [Arabidopsis thaliana]
          Length = 111

 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 21/53 (39%), Positives = 33/53 (62%)
 Frame = -3

Query: 312 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKR 154
           RLY +    GYKR   NQ+ NT+L+++EG   + +  +Y GK   Y+Y+AK +
Sbjct: 10  RLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAKTK 62



 Score = 30.3 bits (65), Expect = 0.75
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -1

Query: 101 WGKVTRPHGNXWQCPSQVQG*PTLPKAMG 15
           WGKVTRPHGN     S+       PK+MG
Sbjct: 72  WGKVTRPHGNSGVVRSKFTS-NLPPKSMG 99


>At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA)
           similar to ribosomal protein L35a GI:57118 from [Rattus
           norvegicus]
          Length = 112

 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 22/53 (41%), Positives = 32/53 (60%)
 Frame = -3

Query: 312 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKR 154
           RLY +    GYKR   NQ+ NT+L++VEG     +  +Y GK   Y+Y+AK +
Sbjct: 11  RLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKAKTK 63



 Score = 29.5 bits (63), Expect = 1.3
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -1

Query: 101 WGKVTRPHGN 72
           WGKVTRPHGN
Sbjct: 73  WGKVTRPHGN 82


>At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD)
           ribosomal protein L35a.e.c15, Saccharomyces cerevisiae,
           PIR:S44069
          Length = 111

 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 21/53 (39%), Positives = 33/53 (62%)
 Frame = -3

Query: 312 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKR 154
           RLY +    GYKR   NQ+ NT+L+++EG   + +  +Y GK   Y+Y+AK +
Sbjct: 10  RLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAKTK 62



 Score = 30.3 bits (65), Expect = 0.75
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -1

Query: 101 WGKVTRPHGNXWQCPSQVQG*PTLPKAMG 15
           WGKVTRPHGN     S+       PK+MG
Sbjct: 72  WGKVTRPHGNSGVVRSKFTS-NLPPKSMG 99


>At3g10980.2 68416.m01324 expressed protein 
          Length = 286

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 159 KRTPIPGGPRGKKTKLRAXLGQGDPPTWQXLAVSEPSSR 43
           K T +P  P    T  R  +G G P  W   A+ + SSR
Sbjct: 22  KNTKVPPCPLDVSTSRRTLIGDGKPRRWSISALPDASSR 60


>At3g10980.1 68416.m01325 expressed protein 
          Length = 557

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 159 KRTPIPGGPRGKKTKLRAXLGQGDPPTWQXLAVSEPSSR 43
           K T +P  P    T  R  +G G P  W   A+ + SSR
Sbjct: 22  KNTKVPPCPLDVSTSRRTLIGDGKPRRWSISALPDASSR 60


>At2g38550.1 68415.m04736 expressed protein contains Pfam profile
           PF03647: Uncharacterised protein family (UPF0136)
          Length = 335

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +1

Query: 85  RVTLPQXSTQLGFFATGTSG 144
           R+ L Q ST LGFF T TSG
Sbjct: 279 RLLLSQKSTFLGFFTTLTSG 298


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,432,291
Number of Sequences: 28952
Number of extensions: 209748
Number of successful extensions: 504
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)