Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G11
         (513 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4Z6F8 Cluster: Putative uncharacterized protein; n=2; ...    32   8.8  
UniRef50_A0DEY3 Cluster: Chromosome undetermined scaffold_48, wh...    32   8.8  

>UniRef50_Q4Z6F8 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 213

 Score = 31.9 bits (69), Expect = 8.8
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 106 HRCYSLIVRFYTLINII*HCK-XIDNIQLYRNKFITYSRTKILYFLILLVKLDVTYN 273
           +R Y  ++    +INI+  C   I NIQ  +N FI+Y  T I  FL +L    +  N
Sbjct: 3   NRAYRFLIEDIGMINILLVCLLSITNIQ--KNNFISYQYTYIWLFLTILCNAIIVVN 57


>UniRef50_A0DEY3 Cluster: Chromosome undetermined scaffold_48, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_48,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 888

 Score = 31.9 bits (69), Expect = 8.8
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +1

Query: 160 HCKXIDNIQLYRNKFITYSRTKILYFL 240
           H   I NI  Y+NK ITYS+ K L FL
Sbjct: 460 HTDSILNIFTYQNKIITYSKDKYLVFL 486


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 413,009,730
Number of Sequences: 1657284
Number of extensions: 6612486
Number of successful extensions: 10773
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10769
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31364627325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)