Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G11
         (513 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    28   0.042
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   8.5  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   8.5  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 28.3 bits (60), Expect = 0.042
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 217 RTKILYFLILLVKLDVTYNYCVRWRPSDG-VYGNITSKISF 336
           +  IL+  I+ +KLD +  Y +  +P DG +  NIT+K  F
Sbjct: 160 KVTILHPNIVKLKLDTSEGYTLSVKPRDGEIVANITAKTFF 200


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 235 FLILLVKLDVTYNYCVRWRPSD 300
           FL  L+  + TY+  ++W P++
Sbjct: 167 FLQNLILKENTYDAVIKWSPNE 188


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 444 CQYIPYTLCYNM 479
           CQY  Y  C NM
Sbjct: 138 CQYCRYQKCLNM 149


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,549
Number of Sequences: 336
Number of extensions: 1954
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12258909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)