Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G11
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021501-2|CAA16415.2|  356|Caenorhabditis elegans Hypothetical ...    29   2.0  
AC006675-2|AAK84549.1|  333|Caenorhabditis elegans Serpentine re...    27   6.0  
Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>AL021501-2|CAA16415.2|  356|Caenorhabditis elegans Hypothetical
           protein Y61B8A.2 protein.
          Length = 356

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 187 LYRNKF-ITYSRTKILYFLILLVKLDVTYNYCVRWRPSD 300
           L +NKF IT  +T+++Y+ + L+    +  Y V++ P D
Sbjct: 137 LVQNKFRITRQKTRVIYYFLFLIPWMSSILYVVKFIPED 175


>AC006675-2|AAK84549.1|  333|Caenorhabditis elegans Serpentine
           receptor, class h protein34 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -2

Query: 362 CCCVTC-YLKNEILDVMLPYTPS 297
           CCCVTC +L N  L  ++ + PS
Sbjct: 56  CCCVTCEWLNNAFLIDIMTFQPS 78


>Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical protein
            C14C10.5 protein.
          Length = 1908

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 181  IQLYRNKFIT-YSRTKILYFLILLVKLDVTYNYCVRWRPSDGVYGNITSKI 330
            ++ Y+N     Y ++K  YFL++     +  +  + WRP D  Y  ++ ++
Sbjct: 1175 LEKYKNLLTEKYEKSKSNYFLLIEQLFTLANDPTLHWRPLDMAYSMLSMQV 1225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,875,271
Number of Sequences: 27780
Number of extensions: 170335
Number of successful extensions: 288
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)