Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G11
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.61 
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    22   4.3  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    22   4.3  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   7.5  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.61
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = +1

Query: 187 LYRNKFITYSRTKILYFLILLVKLDVTYNYCVRWRPSDGVYGNITSKISFF 339
           ++R   + Y+     Y + L+ K  V Y+  V W+P      + +  + FF
Sbjct: 110 IWRPDIVLYNNADGNYEVTLMTKATVYYSGLVVWQPPAVYKSSCSIDVEFF 160


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 25  KTLLSHLXKVFPKHFS 72
           K +LSH+ + +PK +S
Sbjct: 92  KKVLSHIQRTYPKEWS 107


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 25  KTLLSHLXKVFPKHFS 72
           K +LSH+ + +PK +S
Sbjct: 92  KKVLSHIQRTYPKEWS 107


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/19 (36%), Positives = 16/19 (84%)
 Frame = +2

Query: 152 LFNIVXILITFNYIVTSLL 208
           +F+++ ILI++ YI+ ++L
Sbjct: 87  VFSVLTILISYIYILMAIL 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,321
Number of Sequences: 438
Number of extensions: 2055
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)