Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_G10
(760 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 93 3e-19
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 92 4e-19
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 87 1e-17
SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.) 87 1e-17
SB_49103| Best HMM Match : Cpn60_TCP1 (HMM E-Value=2.5e-05) 87 1e-17
SB_53295| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 5e-16
SB_37965| Best HMM Match : TIR (HMM E-Value=3.3) 79 5e-15
SB_17755| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 1e-12
SB_5310| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 4e-12
SB_36771| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 5e-08
SB_56828| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 3e-06
SB_45479| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_59147| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0) 29 3.1
SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17) 29 4.1
SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0) 29 4.1
SB_21130| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.5) 29 4.1
SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_25825| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0) 28 9.5
SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24) 28 9.5
SB_53063| Best HMM Match : DUF359 (HMM E-Value=2.9) 28 9.5
SB_3341| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 531
Score = 92.7 bits (220), Expect = 3e-19
Identities = 50/181 (27%), Positives = 91/181 (50%)
Frame = -3
Query: 737 LGFAGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIE 558
LG + E ++GEDK C ++ T++I+G + L + + ++ D L +N +
Sbjct: 340 LGTCKKIEEVMIGEDKLIHFSGCALNEACTVVIRGATQQILDEAERSLHDALCVLNQTGK 399
Query: 557 DKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQAYAEALLVIPKTLAVNSGYDAQDTI 378
+ + G A E+ + + GK ++++A AL +P +A N+GYD+ D +
Sbjct: 400 ENKTVNGGGASEVLMAHAVSQLAAKTPGKEAAAMESFATALRQLPTIIADNAGYDSADLV 459
Query: 377 VKLQEESRLNSEPIGLDLSTGEAFKPTDLGILDNYIVKKQILNSCSVIASNLLLVDEIMR 198
KL+ GL++ G DLGI ++Y VK+Q+L S + A ++ VD I++
Sbjct: 460 AKLRAAHTQGKNTYGLNMVNGTVGDMRDLGITESYQVKRQVLLSAAEAAEMIVRVDNIVK 519
Query: 197 A 195
A
Sbjct: 520 A 520
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 92.3 bits (219), Expect = 4e-19
Identities = 44/78 (56%), Positives = 60/78 (76%)
Frame = -3
Query: 479 KGKARLGIQAYAEALLVIPKTLAVNSGYDAQDTIVKLQEESRLNSEPIGLDLSTGEAFKP 300
KG + +A+A+ALLVIPKTLA NSG+D Q+T+VKL EE ++ P+G+DLS+GEA P
Sbjct: 352 KGFVVINQKAFADALLVIPKTLAQNSGFDPQETMVKLLEEYADSNTPVGVDLSSGEAMIP 411
Query: 299 TDLGILDNYIVKKQILNS 246
D G+ DNY VK+Q+L+S
Sbjct: 412 ADAGVWDNYRVKRQLLHS 429
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 87.4 bits (207), Expect = 1e-17
Identities = 48/146 (32%), Positives = 78/146 (53%), Gaps = 3/146 (2%)
Frame = -3
Query: 755 DLTEDALGFAGLVYEHVLG--EDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGL 582
+LT + LG AG+V E G +DK +E+C N ++VTI I+G NK + + K ++ D L
Sbjct: 345 ELTSEKLGKAGIVRELSFGTTKDKMLVIEECHNSRAVTIFIRGGNKMIVGEAKRSIHDAL 404
Query: 581 RAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQAYAEALLVIPKTLAVNS 402
+ N + D V+ G A E+ + + K D + + ++AYA+AL IP LA NS
Sbjct: 405 CVVRNLVRDSRVVYGGGATELSCSIAIAKEADKISTIEQYAMRAYADALDNIPLALAENS 464
Query: 401 GYDAQDTIVKLQEESRLNSEP-IGLD 327
G + T+ ++ P +G+D
Sbjct: 465 GLNPIQTVADIKSRQVAEKNPRLGVD 490
>SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 546
Score = 87.4 bits (207), Expect = 1e-17
Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 1/161 (0%)
Frame = -3
Query: 689 FTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKAN 510
FTF+ +CKNP++ TIL++G +K L +++ ++D + N I D ++PG A E+
Sbjct: 149 FTFITECKNPKACTILLRGASKDVLNEVERNLQDAMNVARNVIVDPRLVPGGGACEMALA 208
Query: 509 TELLKYKDTVKGKARLGIQAYAEALLVIPKTLAVNSGYDAQDTIVKLQ-EESRLNSEPIG 333
L + V G + +A A+ L VIP+TL N G + TI L+ + + + G
Sbjct: 209 HALTEKAKLVAGVQQWPYKAVAKGLEVIPRTLIQNCGANTIRTITALRAKHAAEGNTSWG 268
Query: 332 LDLSTGEAFKPTDLGILDNYIVKKQILNSCSVIASNLLLVD 210
+D +G+ +LG+ D Y VK Q + ++ +LL VD
Sbjct: 269 IDGESGQIVDMQELGVWDTYAVKAQTFKT-ALEKKSLLDVD 308
>SB_49103| Best HMM Match : Cpn60_TCP1 (HMM E-Value=2.5e-05)
Length = 206
Score = 87.0 bits (206), Expect = 1e-17
Identities = 48/146 (32%), Positives = 78/146 (53%), Gaps = 3/146 (2%)
Frame = -3
Query: 755 DLTEDALGFAGLVYEHVLG--EDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGL 582
+LT + LG AG+V E G +DK +E+C N ++VTI I+G NK + + K ++ D L
Sbjct: 60 ELTSEKLGKAGIVRELSFGTTKDKMLVIEECHNSRAVTIFIRGGNKMIVGEAKRSIHDAL 119
Query: 581 RAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQAYAEALLVIPKTLAVNS 402
+ N + D V+ G A E+ + + K D + + ++AYA+AL IP LA NS
Sbjct: 120 CVVRNLVRDSRVVYGGGATELSCSIAIAKEADKIATIEQYAMRAYADALDNIPLALAENS 179
Query: 401 GYDAQDTIVKLQEESRLNSEP-IGLD 327
G + T+ ++ P +G+D
Sbjct: 180 GLNPIQTVADIKSRQVAEKNPGLGVD 205
>SB_53295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 272
Score = 81.8 bits (193), Expect = 5e-16
Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 1/187 (0%)
Frame = -3
Query: 758 DDLTEDALGFAGLVYEHVLGEDKFTFVEQCKNP-QSVTILIKGPNKHTLTQIKDAVRDGL 582
D D L A LV E +G K + NP +V++L++G NK L + ++ D L
Sbjct: 30 DHFNPDMLASAELVEEVSVGTSKVVKITGVSNPGNTVSVLVRGSNKLVLEEADRSLHDAL 89
Query: 581 RAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQAYAEALLVIPKTLAVNS 402
I ++ + +I G A EI+ L +Y T+ ++A+AEAL +IP TLA N+
Sbjct: 90 CVIRCLVKKRALIAGGGAPEIEVALRLAEYSQTLTSMDAYCVRAFAEALEIIPYTLAENA 149
Query: 401 GYDAQDTIVKLQEESRLNSEPIGLDLSTGEAFKPTDLGILDNYIVKKQILNSCSVIASNL 222
G + T+ +L+ G+++ G + +L +V + S ++
Sbjct: 150 GLNPIATVTELRNRHAQGEVTAGINVRKGTVTNILEENVLQPLLVSTSAVQLASETVRSI 209
Query: 221 LLVDEIM 201
L +D+I+
Sbjct: 210 LKIDDIV 216
>SB_37965| Best HMM Match : TIR (HMM E-Value=3.3)
Length = 189
Score = 78.6 bits (185), Expect = 5e-15
Identities = 46/165 (27%), Positives = 87/165 (52%), Gaps = 8/165 (4%)
Frame = -3
Query: 668 KNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYK 489
K S +I+++G N + L +++ ++ D + + +E K ++PG A E + L +
Sbjct: 3 KARSSSSIILRGANDYMLDEMERSMHDAICVVKRVLESKTLVPGGGAVEAALSIYLENFA 62
Query: 488 DTVKGKARLGIQAYAEALLVIPKTLAVNSGYDAQDTIVKLQ---EESRLNSEP-----IG 333
++ + +L I +A +LLVIPK L+VN+ D+ D + KL+ S++N+E IG
Sbjct: 63 TSLGSREQLAIAEFANSLLVIPKILSVNAAKDSADLVAKLRAFHNTSQINAERSHLKWIG 122
Query: 332 LDLSTGEAFKPTDLGILDNYIVKKQILNSCSVIASNLLLVDEIMR 198
LDL G G+ + I K + L + A +L +D++++
Sbjct: 123 LDLVEGTVRDNKKAGVFEPAICKIKSLKFATEAAITILRIDDMIK 167
>SB_17755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 317
Score = 70.9 bits (166), Expect = 1e-12
Identities = 36/108 (33%), Positives = 59/108 (54%)
Frame = -3
Query: 689 FTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKAN 510
FTF+ +C NP++ TIL++G +K L +++ ++D + N I D ++PG A E+
Sbjct: 206 FTFITECNNPKACTILLRGASKDVLNEVERNLQDAMNVARNVIVDPRLVPGGGACEMALA 265
Query: 509 TELLKYKDTVKGKARLGIQAYAEALLVIPKTLAVNSGYDAQDTIVKLQ 366
L + V G + +A A+ L VIP+TL N G + TI L+
Sbjct: 266 HALTEKAKLVAGVQQWPYKAVAKGLEVIPRTLIQNCGANTIRTITALR 313
>SB_5310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 68.9 bits (161), Expect = 4e-12
Identities = 32/118 (27%), Positives = 66/118 (55%)
Frame = -3
Query: 689 FTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKAN 510
+ F CK + TI+++G + + + + ++ D + + A+++ V+ G A E++ +
Sbjct: 2 YNFFSGCKQSTTCTIIMRGGAEQFMEETERSLHDAIMIVRRAMKNDAVVAGGGAIEMELS 61
Query: 509 TELLKYKDTVKGKARLGIQAYAEALLVIPKTLAVNSGYDAQDTIVKLQEESRLNSEPI 336
L Y T+ GK +L I A A+A +IP+ L N+G+DA + + KL+++ +P+
Sbjct: 62 KYLRDYSRTIAGKEQLLIGAMAKAFEIIPRQLCDNAGFDATNILNKLRQKHFQVGKPV 119
>SB_36771| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 55.2 bits (127), Expect = 5e-08
Identities = 27/78 (34%), Positives = 44/78 (56%)
Frame = -3
Query: 428 IPKTLAVNSGYDAQDTIVKLQEESRLNSEPIGLDLSTGEAFKPTDLGILDNYIVKKQILN 249
+P +A N+GYD+ D + KL+ GL++ G DLGI ++Y VK+Q+L
Sbjct: 1 LPTIIADNAGYDSADLVAKLRAAHTQGKNTYGLNMVNGTVGDMRDLGITESYQVKRQVLL 60
Query: 248 SCSVIASNLLLVDEIMRA 195
S + A ++ VD I++A
Sbjct: 61 SAAEAAEMIVRVDNIVKA 78
>SB_56828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 525
Score = 49.6 bits (113), Expect = 3e-06
Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Frame = -3
Query: 749 TEDALGFAGLVYEHVLGEDKFTFVEQCKNPQSV-TILIKGPNKHTLTQIKDAVRDGLRAI 573
TED LG LVY +GE T +Q + +V T++I+G ++ + I+ A+ DG+ +
Sbjct: 195 TED-LGHCDLVYLSEIGETPVTIFKQEREETAVATVVIRGSTENIMDDIERAIDDGVNSF 253
Query: 572 NNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQAYAEALLVIPKTLAVNSGYD 393
D +PGA A EI+ +L + + + ++A + + K + D
Sbjct: 254 KALTRDPRFVPGAGASEIELARKLTSHAECGSADIKDAVEA-GILDVYLTKHWGLKLATD 312
Query: 392 AQDTIVKLQEES 357
A T++++ + S
Sbjct: 313 AAVTVLRVDQRS 324
>SB_45479| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 55
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -3
Query: 485 TVKGKARLGIQAYAEALLVIPKTLAVNSGYDAQDTIVKL---QEESRLNS 345
T G + I +AE+L +P+ LA N+G A + I KL +E ++N+
Sbjct: 1 TFAGLEQYAIAKFAESLECVPRALADNAGVKATELISKLYAAHQEGKMNA 50
>SB_59147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +1
Query: 118 CKSSQXLEXPQNKTFFYYYPLRLLIPALIISSTRRRLLAITEQEFN 255
C+ S+ + P F Y+ PL LL LI+ S ++L +Q+FN
Sbjct: 291 CEESEGVAVPSILMFLYFTPLGLLQLCLILVSRLIKVLFKFKQQFN 336
>SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 915
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/63 (28%), Positives = 35/63 (55%)
Frame = -1
Query: 694 TNLPLLNNARIHNLLPSSSRDPTSIP*HKSKMQFVTASALLITPLKINASYPVLRPSKSK 515
T++ LL R+ + + +R + +KMQF+TASAL P+ ++A + ++ P
Sbjct: 670 TSIMLLKTDRLLRVFRAKARLTSRSNLLTNKMQFLTASALTSFPVVMSAVWFLISPPDVT 729
Query: 514 LTR 506
+T+
Sbjct: 730 VTQ 732
>SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)
Length = 905
Score = 29.1 bits (62), Expect = 4.1
Identities = 31/126 (24%), Positives = 55/126 (43%)
Frame = -3
Query: 626 KHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQAY 447
KH+ T I+DAV+ I +A++ + A +K + ++ D VK A + I+
Sbjct: 312 KHSATVIEDAVKHSSTVIEDAVKHSATVIEDA---VKHSATVV--GDAVKRSATV-IERP 365
Query: 446 AEALLVIPKTLAVNSGYDAQDTIVKLQEESRLNSEPIGLDLSTGEAFKPTDLGILDNYIV 267
+ P+ ++A+ VK EE + S+ IG ++ E K D+
Sbjct: 366 PKGKTSNPQVNKTCEQHEAKLQDVKATEEKMIKSKNIGATCNSEEMSKANKSPACDSSEK 425
Query: 266 KKQILN 249
+Q LN
Sbjct: 426 DEQELN 431
>SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0)
Length = 1649
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/75 (28%), Positives = 38/75 (50%)
Frame = -1
Query: 730 LQA*XTNTCSEKTNLPLLNNARIHNLLPSSSRDPTSIP*HKSKMQFVTASALLITPLKIN 551
LQ NT E T+LP L +L+P +S + T ++S+ + A + L++ ++
Sbjct: 114 LQNESDNTSLEVTSLPELEENSELSLMPFASENTTKTTSNRSEREPAPAVSPLVSSQEVK 173
Query: 550 ASYPVLRPSKSKLTR 506
S+ L S K+T+
Sbjct: 174 -SFHALPQSTPKITK 187
>SB_21130| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.5)
Length = 565
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/75 (28%), Positives = 38/75 (50%)
Frame = -1
Query: 730 LQA*XTNTCSEKTNLPLLNNARIHNLLPSSSRDPTSIP*HKSKMQFVTASALLITPLKIN 551
LQ NT E T+LP L +L+P +S + T ++S+ + A + L++ ++
Sbjct: 255 LQNESDNTSLEVTSLPELEENSELSLMPFASENTTKTTSNRSEREPAPAVSPLVSSQEVK 314
Query: 550 ASYPVLRPSKSKLTR 506
S+ L S K+T+
Sbjct: 315 -SFHALPQSTPKITK 328
>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1110
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 646 SSSRDPTSIP*HKSKMQFVTASALLITPL 560
+SS +P H+ K+Q+ S LLITPL
Sbjct: 243 ASSSNPDQDADHQKKVQYTKGSVLLITPL 271
>SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 606 DLCQGMLVGSLDEDGNRL 659
DLC+ LVG++DE G RL
Sbjct: 147 DLCETFLVGNVDESGRRL 164
>SB_25825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -2
Query: 291 RYFGQLYREKTNIEFLFSDRKQPPP-CRRDYESRNEQPQRIIIKKCFIL 148
RY+G Y + T+++FL R P P +++ES + Q ++ +C ++
Sbjct: 21 RYYGVCYADSTSLDFL---RAYPKPFAFKEHESHSAQTDNVV--RCIVI 64
>SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2353
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -3
Query: 683 FVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIEDKCVI 543
F++ C N + + IL K P K +R RA +E+KC +
Sbjct: 774 FIQTCDNSEPLCIL-KSPKKSVSIPGGQTLRINCRANTGPVEEKCPV 819
>SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24)
Length = 1065
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/37 (32%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Frame = +1
Query: 457 IPRRALPLTVSLYFSSSVLALISKAA-APGMTHLSSM 564
IPR+ P T+S+Y++S+ + +S+++ A ++H S++
Sbjct: 658 IPRQEHPATISVYYASTCSSGLSQSSKAASLSHSSAL 694
>SB_53063| Best HMM Match : DUF359 (HMM E-Value=2.9)
Length = 378
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -3
Query: 683 FVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIEDKCVI 543
F++ C N + + IL K P K +R RA +E+KC +
Sbjct: 19 FIQTCDNSEPLCIL-KSPKKSVSIPGGQTLRINCRANTGPVEEKCPV 64
>SB_3341| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 27.9 bits (59), Expect = 9.5
Identities = 24/102 (23%), Positives = 47/102 (46%)
Frame = -3
Query: 524 EIKANTELLKYKDTVKGKARLGIQAYAEALLVIPKTLAVNSGYDAQDTIVKLQEESRLNS 345
++ N ++KY T+K A L A +A LV T+ + + + + + ++ RL
Sbjct: 292 QVNINNLVIKYDSTLK--ALLDKHAPLKAKLV---TIRLKAAWYTPEVSEEKRKRRRLER 346
Query: 344 EPIGLDLSTGEAFKPTDLGILDNYIVKKQILNSCSVIASNLL 219
+ + LST A G+++N+I + S+I + L
Sbjct: 347 KWVSTGLSTDRANYAYQCGVVNNFIDSLKTSYYTSIIQEHSL 388
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,526,921
Number of Sequences: 59808
Number of extensions: 409474
Number of successful extensions: 2163
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2162
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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